PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016505846.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 701aa MW: 78355.2 Da PI: 8.4711

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016505846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rH+r+H XP_016505846.1 76 KCEKCSREFYAPINYRRHMRLH 97 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ 60 DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK 120 LSVDEIKEVV SLHDVSIKDL AGSSLVNDLA TSLQKMAIWA HPQDYYEAGL ALLEVIQGKP 180 SKLPITSQEL FSILDDASET TFLCAGTAES VQKYVFDGYA AKKGLEFKNL VACASFLFEQ 240 KLVKAWFADK DAEAMRCQKL LFEEEEAAQK RRAELLERKK LKKLRQKEQR AREQSNWERG 300 DLEVPADSFE GPIAESSVRS AAASESSSST PQVSDDIYSC LELVQFSNNE NMDIEAQLNI 360 SHPHLDLVEI QDVEPPPVSA NSRRHFPHTQ WQVAKSQRTG RNGFRNNQNH EVQNLEPIQK 420 HGVIKDRGAP VNGSKIWTRK IRVQNGERLR LDPQKEAIDQ NQRNCEVMIG SISVSMKNCS 480 THGQGNCPAV ERDNFESIEP AMLQKLNHVQ KPAKHDVLQG GSNGAAVKLW RPVSRHGSGR 540 QDPGEDVISV KLDNRTSSTE NNLRLCSRDN PTGKTKNYTC QVSDGNVLQG LGFCSVSAKA 600 FLSQRWKEAI SGDHVRLVLS DDIEVSGQSD TQNGSSEAAP RSADQDHGIL VKADNQQANT 660 GDLSFSSNGN SKVKFRQKPD KSTKIKCIPK QKKQKQKQAL I

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ  60
DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSVDEIKEVV SLHDVSIKDL AGSSLVNDLA TSLQKMAIWA HPQDYYEAGL ALLEVIQGKP  180
SKLPITSQEL FSILDDASET TFLCAGTAES VQKYVFDGYA AKKGLEFKNL VACASFLFEQ  240
KLVKAWFADK DAEAMRCQKL LFEEEEAAQK RRAELLERKK LKKLRQKEQR AREQSNWERG  300
DLEVPADSFE GPIAESSVRS AAASESSSST PQVSDDIYSC LELVQFSNNE NMDIEAQLNI  360
SHPHLDLVEI QDVEPPPVSA NSRRHFPHTQ WQVAKSQRTG RNGFRNNQNH EVQNLEPIQK  420
HGVIKDRGAP VNGSKIWTRK IRVQNGERLR LDPQKEAIDQ NQRNCEVMIG SISVSMKNCS  480
THGQGNCPAV ERDNFESIEP AMLQKLNHVQ KPAKHDVLQG GSNGAAVKLW RPVSRHGSGR  540
QDPGEDVISV KLDNRTSSTE NNLRLCSRDN PTGKTKNYTC QVSDGNVLQG LGFCSVSAKA  600
FLSQRWKEAI SGDHVRLVLS DDIEVSGQSD TQNGSSEAAP RSADQDHGIL VKADNQQANT  660
GDLSFSSNGN SKVKFRQKPD KSTKIKCIPK QKKQKQKQAL I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKKLKKL
2	688	695	PKQKKQKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016505846.1	0.0	PREDICTED: uncharacterized protein LOC107823668 isoform X3
TrEMBL	A0A1S4CXJ6	0.0	A0A1S4CXJ6_TOBAC; uncharacterized protein LOC107823668 isoform X3
STRING	XP_009785120.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-112	C2H2-like zinc finger protein