PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016505845.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 708aa MW: 79115 Da PI: 7.4438

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016505845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rH+r+H XP_016505845.1 76 KCEKCSREFYAPINYRRHMRLH 97 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ 60 DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK 120 LSVDEIKEVV SLHDVSIKVS TRFTLPVHDV SIKDLAGSSL VNDLATSLQK MAIWAHPQDY 180 YEAGLALLEV IQGKPSKLPI TSQELFSILD DASETTFLCA GTAESVQKYV FDGYAAKKGL 240 EFKNLVACAS FLFEQKLVKA WFADKDAEAM RCQKLLFEEE EAAQKRRAEL LERKKLKKLR 300 QKEQRAREQS NWERGDLEVP ADSFEGPIAE SSVRSAAASE SSSSTPQVSD DIYSCLELVQ 360 FSNNENMDIE AQLNISHPHL DLVEIQDVEP PPVSANSRRH FPHTQWQVAK SQRTGRNGFR 420 NNQNHEVQNL EPIQKHGVIK DRGAPVNGSK IWTRKIRVQN GERLRLDPQK EAIDQNQRNC 480 EVMIGSISVS MKNCSTHGQG NCPAVERDNF ESIEPAMLQK LNHVQKPAKH DVLQGGSNGA 540 AVKLWRPVSR HGSGRQDPGE DVISVKLDNR TSSTENNLRL CSRDNPTGKT KNYTCQVSDG 600 NVLQGLGFCS VSAKAFLSQR WKEAISGDHV RLVLSDDIEV SGQSDTQNGS SEAAPRSADQ 660 DHGILVKADN QQANTGDLSF SSNGNSAHRI FALFGSLHWL LIFFYPPK

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ  60
DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSVDEIKEVV SLHDVSIKVS TRFTLPVHDV SIKDLAGSSL VNDLATSLQK MAIWAHPQDY  180
YEAGLALLEV IQGKPSKLPI TSQELFSILD DASETTFLCA GTAESVQKYV FDGYAAKKGL  240
EFKNLVACAS FLFEQKLVKA WFADKDAEAM RCQKLLFEEE EAAQKRRAEL LERKKLKKLR  300
QKEQRAREQS NWERGDLEVP ADSFEGPIAE SSVRSAAASE SSSSTPQVSD DIYSCLELVQ  360
FSNNENMDIE AQLNISHPHL DLVEIQDVEP PPVSANSRRH FPHTQWQVAK SQRTGRNGFR  420
NNQNHEVQNL EPIQKHGVIK DRGAPVNGSK IWTRKIRVQN GERLRLDPQK EAIDQNQRNC  480
EVMIGSISVS MKNCSTHGQG NCPAVERDNF ESIEPAMLQK LNHVQKPAKH DVLQGGSNGA  540
AVKLWRPVSR HGSGRQDPGE DVISVKLDNR TSSTENNLRL CSRDNPTGKT KNYTCQVSDG  600
NVLQGLGFCS VSAKAFLSQR WKEAISGDHV RLVLSDDIEV SGQSDTQNGS SEAAPRSADQ  660
DHGILVKADN QQANTGDLSF SSNGNSAHRI FALFGSLHWL LIFFYPPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	298	ERKKLKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016505845.1	0.0	PREDICTED: uncharacterized protein LOC107823668 isoform X2
TrEMBL	A0A1S4CXG1	0.0	A0A1S4CXG1_TOBAC; uncharacterized protein LOC107823668 isoform X2
STRING	XP_009785120.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-108	C2H2-like zinc finger protein