PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016505442.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 666aa MW: 76026.3 Da PI: 9.8617 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.2e-13 | 17 | 94 | 9 | 98 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k+g l +p f+ ++ +g ++ + + g++W +k+ ++++ +++GW eF+++++L+ gD++vF+++g++ef +v++f XP_016505442.1 17 PGFKNG-LKIPVGFL-KYlKGH--DNV-HAILRRGGKKWVMKV--NGRR----MEDGWTEFAEEHDLQLGDMLVFRHEGNMEF--NVSIFG 94 556666.9*******.664433..233.3456679********..8887....89***********************99999..999986 PP | |||||||
2 | B3 | 48.9 | 1.2e-15 | 158 | 243 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++ l++ l++p++fa ++ +++++ t++++d + rsW+ l +++ +++++GW eF+ ++ LkegD v+F+ ++ +++++ +k++ XP_016505442.1 158 IKPYCLTKYFLRIPRQFALDNRLNNRK-CTIIMRD-ELRSWTCSL--HTNGN-TYIGRGWHEFCTDKCLKEGDRVMFEIVS-NGETPIFKFH 243 6788889999***********999765.5999999.78*******..66654.579**********************887.6666787776 PP | |||||||
3 | B3 | 54.3 | 2.4e-17 | 302 | 386 | 5 | 94 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++ l+++ + +p++fa ++ +++++ +++ + rsW++ l +s+ +++++GW+eF+ ++ LkegD v+F+ +++ ++++v+ XP_016505442.1 302 TIRPYCLSKHFVAVPRQFALKNRLNNRKC--MIIIRNERRSWTFSL--YTSSNNTYFGRGWREFCIEKCLKEGDRVMFEIISN-GETPVF 386 567899999*************9997665..66677799*******..999999*************************9985.443444 PP | |||||||
4 | B3 | 41.3 | 2.8e-13 | 438 | 506 | 5 | 76 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 ++++++ k++ l+lp f++++g+ + ++ +++l +e+ rsW+v+l + + ++ +++GW+eFv+ang+++ XP_016505442.1 438 TIKPYTIKHHVLYLPLAFVKSNGLMN-RHCEMILVNEKRRSWSVQL--GQMGHHFGIKRGWREFVRANGVQV 506 56899*****************8774.5669***************..888888***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-21 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-20 | 6 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.21 | 8 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.84E-15 | 10 | 93 | No hit | No description |
SMART | SM01019 | 8.6E-18 | 11 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-10 | 19 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-17 | 151 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-13 | 153 | 246 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.223 | 153 | 245 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.2E-16 | 153 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.18E-13 | 158 | 244 | No hit | No description |
Pfam | PF02362 | 1.0E-13 | 158 | 244 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.03E-14 | 292 | 388 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-21 | 295 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-20 | 296 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.8E-15 | 298 | 392 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.887 | 298 | 391 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 302 | 387 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-15 | 427 | 506 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-13 | 430 | 506 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.78E-13 | 433 | 506 | No hit | No description |
PROSITE profile | PS50863 | 8.91 | 434 | 532 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-9 | 435 | 524 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-11 | 438 | 506 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MKKVPPKKSH FFKPILPGFK NGLKIPVGFL KYLKGHDNVH AILRRGGKKW VMKVNGRRME 60 DGWTEFAEEH DLQLGDMLVF RHEGNMEFNV SIFGSSCCER EYAAYMQEDE DEEEETPKKF 120 DLEEKVKANI RTSGKAFPNA EAANKGMHLS PSHLICTIKP YCLTKYFLRI PRQFALDNRL 180 NNRKCTIIMR DELRSWTCSL HTNGNTYIGR GWHEFCTDKC LKEGDRVMFE IVSNGETPIF 240 KFHDLRGNPS HHPEVKKNNF DAKRISDEEK PKANIKASDK AFPNVEAAEK DKHLTHSHFI 300 CTIRPYCLSK HFVAVPRQFA LKNRLNNRKC MIIIRNERRS WTFSLYTSSN NTYFGRGWRE 360 FCIEKCLKEG DRVMFEIISN GETPVFVFQD LRGSPSLHPE VKKNYLDAKR IKTMDATSPK 420 VQVPASTSAD ANPHFISTIK PYTIKHHVLY LPLAFVKSNG LMNRHCEMIL VNEKRRSWSV 480 QLGQMGHHFG IKRGWREFVR ANGVQVYILV RMPRITPSEA IDKIQKLLVM GKETGTEASE 540 YNKILSPLTG FSKRRLRLAG TVVVNGEGQK LVSQKTQAAA PLVAPVVDQQ NGRNDNGNFS 600 QSDNYLTHLV ELDSRLPKND SGMNKVLSEC GVSSSNVSTM VQPQLNAHVD ENPQKSMANK 660 DPVALA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016505442.1 | 0.0 | PREDICTED: putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A1S4CW37 | 0.0 | A0A1S4CW37_TOBAC; putative B3 domain-containing protein REM15 | ||||
STRING | XP_009792889.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 3e-60 | B3 family protein |