PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016505243.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 321aa    MW: 37617.3 Da    PI: 4.4553
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016505243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11.1e-36111032103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k ye++ede++++lisw+++ n+f+++d  +f++++LpkyFkhsnf+SFvRQLn+YgF+k+++++         weF+++sF kg+k+ll++
  XP_016505243.1  11 FLLKCYEMVEDESTDSLISWDQSDNNFIIWDVPKFSSQLLPKYFKHSNFSSFVRQLNIYGFHKTDTDR---------WEFANDSFLKGQKHLLKN 96 
                     9********************999****************************************9999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_016505243.1  97 IVRRKQS 103
                     ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-367100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-337100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-537100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-181134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3011100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-184961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVKSFENVAP FLLKCYEMVE DESTDSLISW DQSDNNFIIW DVPKFSSQLL PKYFKHSNFS  60
SFVRQLNIYG FHKTDTDRWE FANDSFLKGQ KHLLKNIVRR KQSSVVQKKS SQKEESKSCK  120
FEENKSLELW EEVENLKTDK NVLTEELVKL RQHQQNSESK LILLREQLKV MEKHQQQMLS  180
FIVMAMQSPN FLVQFFQPKE NNWRVNENGN NILSDVEDYS EDTPSDRAIV RYHPPTHEAA  240
EPLCAELETA VDTQKPMELD LSCDEIKDLF SNIDFFSGLM DEKLLSFENS VPLTLPDLPD  300
DEDMLEQLLL SQPITENKED E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-24710516124Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142300.0BT014230.1 Lycopersicon esculentum clone 133429F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770996.10.0PREDICTED: heat stress transcription factor A-8
RefseqXP_016505243.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLA0A1S4CVV80.0A0A1S4CVV8_TOBAC; heat stress transcription factor A-8
TrEMBLA0A1U7W1C20.0A0A1U7W1C2_NICSY; heat stress transcription factor A-8
STRINGXP_009770996.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.15e-73heat shock transcription factor A8