PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016505243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 321aa MW: 37617.3 Da PI: 4.4553 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.1 | 1.1e-36 | 11 | 103 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k ye++ede++++lisw+++ n+f+++d +f++++LpkyFkhsnf+SFvRQLn+YgF+k+++++ weF+++sF kg+k+ll++ XP_016505243.1 11 FLLKCYEMVEDESTDSLISWDQSDNNFIIWDVPKFSSQLLPKYFKHSNFSSFVRQLNIYGFHKTDTDR---------WEFANDSFLKGQKHLLKN 96 9********************999****************************************9999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k++ XP_016505243.1 97 IVRRKQS 103 ***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-36 | 7 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.67E-33 | 7 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-53 | 7 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-18 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-30 | 11 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-18 | 49 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-18 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MVKSFENVAP FLLKCYEMVE DESTDSLISW DQSDNNFIIW DVPKFSSQLL PKYFKHSNFS 60 SFVRQLNIYG FHKTDTDRWE FANDSFLKGQ KHLLKNIVRR KQSSVVQKKS SQKEESKSCK 120 FEENKSLELW EEVENLKTDK NVLTEELVKL RQHQQNSESK LILLREQLKV MEKHQQQMLS 180 FIVMAMQSPN FLVQFFQPKE NNWRVNENGN NILSDVEDYS EDTPSDRAIV RYHPPTHEAA 240 EPLCAELETA VDTQKPMELD LSCDEIKDLF SNIDFFSGLM DEKLLSFENS VPLTLPDLPD 300 DEDMLEQLLL SQPITENKED E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-24 | 7 | 105 | 16 | 124 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014230 | 0.0 | BT014230.1 Lycopersicon esculentum clone 133429F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770996.1 | 0.0 | PREDICTED: heat stress transcription factor A-8 | ||||
Refseq | XP_016505243.1 | 0.0 | PREDICTED: heat stress transcription factor A-8 | ||||
TrEMBL | A0A1S4CVV8 | 0.0 | A0A1S4CVV8_TOBAC; heat stress transcription factor A-8 | ||||
TrEMBL | A0A1U7W1C2 | 0.0 | A0A1U7W1C2_NICSY; heat stress transcription factor A-8 | ||||
STRING | XP_009770996.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12235 | 22 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 5e-73 | heat shock transcription factor A8 |