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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016505053.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | NAC | ||||||||
| Protein Properties | Length: 520aa MW: 59629.5 Da PI: 5.4534 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 181.5 | 2.1e-56 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v
XP_016505053.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPdKsVLPSKDLEWYFFSPRDRKYPNGTRTNRATKAGYWKATGKDRKVN 99
79****************************.99**************96434555777************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
s + +++g+kktLv+y+grap+g++t Wvmheyrle
XP_016505053.1 100 S-QMRAIGMKKTLVYYRGRAPHGSRTGWVMHEYRLE 134
*.9999****************************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.22E-63 | 4 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 61.781 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 2.3E-30 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 520 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPDKSVLPSK 60 DLEWYFFSPR DRKYPNGTRT NRATKAGYWK ATGKDRKVNS QMRAIGMKKT LVYYRGRAPH 120 GSRTGWVMHE YRLEERECEV ANGMQDAYAL CRVFKKSLNA PKSGDHYASD RSSSIDVYTE 180 ESRFDDIDHT SPNYGMPMNV AATTHDDKWM QYLSDEAFTS INPNSNGYHP SKVDVALECA 240 RLQHRFALPP LEVQDFPQVG YVDSRTISQS NDHLMYQTTN QTDIVQEILS VAQASHHLTN 300 QDSWGGNYSY APPCDDFSFL PHNNQLIHDL GDSFNFMEQL NEDHNARSIA VTDFDDKTFL 360 EDYKTVPIEN ISGPHKEEQD LQGEASGVHN SLNEIEANNF SLGFGNDSFL DDEETDGFEV 420 YEKIEVRQLG LFVATRQAAN TFYHQVVPSK TVTVHRDLEH DFPIRKIQEN ATLLDTFMAF 480 SRKTLSGVMR VTRPWKGKVS TWVDMIAPLY TFWSILGNAY |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975441 | 8e-48 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016505053.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
| TrEMBL | A0A1S4CVB8 | 0.0 | A0A1S4CVB8_TOBAC; NAC domain-containing protein 86-like | ||||
| STRING | XP_009588904.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1495 | 23 | 48 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 1e-135 | NAC domain containing protein 28 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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