PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016504673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22686.4 Da PI: 7.5042 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 22 | 65 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y+GVr+++ +gr++AeIr p++ ++r++lg+f+taeeAa a++ XP_016504673.1 22 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTFDTAEEAALAYDI 65 69********.**********933...5******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.76E-28 | 22 | 80 | No hit | No description |
Pfam | PF00847 | 9.4E-12 | 22 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-26 | 23 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.574 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-29 | 23 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-18 | 23 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.3E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MENIIPQLHV RNLGRRSSRH STKYHGVRRR PWGRYAAEIR NPNTKQRHWL GTFDTAEEAA 60 LAYDISSIAF CGIENARTNF VYPFMSFPSS SSQPPPSPPP PPPPPPPSTP ELEVIENEED 120 DNDNDNDDDE ICVYANVLLV TRISRGGINA MHSTLQEHWC RCFSLQLKGN VLPKVSSNTN 180 LSRRLGMQGG RQQICSSWLM S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 14 | 72 | 5 | 64 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914525 | 3e-91 | CU914525.3 S.lycopersicum DNA sequence from clone LE_HBa-149O17 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 3e-91 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016504673.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor ERF087-like | ||||
TrEMBL | A0A1S4CU83 | 1e-148 | A0A1S4CU83_TOBAC; ethylene-responsive transcription factor ERF087-like | ||||
STRING | XP_009781053.1 | 2e-60 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 3e-26 | ERF family protein |