PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504160.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 337aa    MW: 38080.6 Da    PI: 8.0543
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.31.3e-381232814135
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec. 73 
                      kdrhski+T++g+RdRR+Rls++ a++fF Lqd+LGfdk+skt+eWLl++++ +i el++                          +s+ sec 
  XP_016504160.1 123 HKDRHSKISTARGLRDRRMRLSLDAARKFFSLQDMLGFDKASKTVEWLLTKSESEIEELAKGnkegeslpkqscsttngigaistA-ISSiSECe 216
                     69***********************************************************9999999999888888888777642.22246676 PP

             TCP  74 ..eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                       +  ++sss   +++ + ak   k+k ++++ a++  l   esr++ar rarert+ k++++++
  XP_016504160.1 217 viSGTDESSSITDKKKLETAKGPLKKKGKTARRATFDPLITrESRNQARVRARERTKLKKSLSKS 281
                     664444444444444447777777888888888888888888***************99988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-41122276IPR005333Transcription factor, TCP
PROSITE profilePS5136933.281123181IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.414258275IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYPPSNSCNY SPIFNIPSPC MQYGDELFFQ YYHDDYLQEQ QVPLIEDQSL DILAESTETV  60
TNNKETVINS DHSVKVYNIE TVTNSQGLGG NEEKRVEGRE NKRDDMSGTI SIIHGRKNKK  120
CSHKDRHSKI STARGLRDRR MRLSLDAARK FFSLQDMLGF DKASKTVEWL LTKSESEIEE  180
LAKGNKEGES LPKQSCSTTN GIGAISTAIS SISECEVISG TDESSSITDK KKLETAKGPL  240
KKKGKTARRA TFDPLITRES RNQARVRARE RTKLKKSLSK SKAMTHENSA DDCNLVVNFG  300
DWSQFSIFNY QQNAVGISHD QQQFTDFQFC GNKLWEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245LKKKGKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763147.10.0PREDICTED: transcription factor CYCLOIDEA-like isoform X1
RefseqXP_016504160.10.0PREDICTED: transcription factor CYCLOIDEA-like isoform X1
TrEMBLA0A1S4CSS50.0A0A1S4CSS5_TOBAC; transcription factor CYCLOIDEA-like isoform X1
TrEMBLA0A1U7V4M10.0A0A1U7V4M1_NICSY; transcription factor CYCLOIDEA-like isoform X1
STRINGXP_009763147.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-27TCP family protein