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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016504089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 595aa MW: 68787.2 Da PI: 8.0203 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.6 | 1.3e-14 | 16 | 94 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k++ l +pk f+ ++ +g ++e + + + W vk+ + + +++GW eF+k+n+L+ gD++vF+++g++ef v++f++ XP_016504089.1 16 PGFKHA-LKIPKGFL-KYlKGHEHE---HAVLRRADKYWLVKV--NAY----RFKAGWAEFAKENDLQLGDILVFRYEGNMEF--EVMIFDS 94 456666.********.564666444...56777899*******..555....5**************************9999..8999886 PP | |||||||
2 | B3 | 52.4 | 9.8e-17 | 194 | 275 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++ l+ g l+lp +fa+ ++k ++ l+++de+ r W++kl+ + +++r+ +++GW++F +n+LkegD +vF+++ ++e+ XP_016504089.1 194 TIKPYCLTYGYLYLPQQFANGLSNK--KG-NLIIRDERQRLWNLKLS-SDYKKRVRIGDGWRKFIADNRLKEGDRIVFEVVTDEET 275 578999999*********9555444..33.6999************6.6666799************************8876544 PP | |||||||
3 | B3 | 47.6 | 3.1e-15 | 349 | 429 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++ l+ g l+lp +fa+ + +ke+ +l+++de+ r W++kl+ + +++r+ +++GW++F +n+Lk gD ++F+++ ++e XP_016504089.1 349 TIKPYCLTYGYLYLPQPFANGLS-NKEC--DLIIRDERQRLWNLKLS-SDCKNRVRIGDGWRKFIVDNRLKKGDRIMFEVVTDEE 429 578999999*********94443.3344..8***************5.7788889************************876543 PP | |||||||
4 | B3 | 61 | 2e-19 | 482 | 571 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++++ +++r+ +pk fa+e+g+++++ t++++d + rsWe++l y+ + g++++++ W++F+ an LkegD ++F+ +++++ +k++ XP_016504089.1 482 TVKPHHISKCRMHVPKLFARENGLSNRQ-CTIVIRDYEQRSWEFRL-YSSCAGSTFIGGEWRKFCAANFLKEGDCIMFEIFA-KGEKPILKFY 571 56899999**************999765.6****************.9999999*************************544.7777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-21 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 7 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.675 | 7 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.03E-15 | 8 | 93 | No hit | No description |
SMART | SM01019 | 3.0E-14 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-11 | 19 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-18 | 188 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-17 | 188 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.437 | 190 | 286 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-12 | 191 | 283 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 194 | 275 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.71E-12 | 195 | 268 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-16 | 343 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-15 | 343 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.59 | 345 | 440 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-8 | 346 | 437 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-13 | 349 | 429 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.35E-11 | 350 | 423 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-19 | 475 | 569 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-18 | 478 | 570 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.17E-18 | 478 | 572 | No hit | No description |
PROSITE profile | PS50863 | 12.464 | 478 | 576 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-13 | 479 | 574 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-18 | 482 | 571 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MKVRPVKPHF FKPILPGFKH ALKIPKGFLK YLKGHEHEHA VLRRADKYWL VKVNAYRFKA 60 GWAEFAKEND LQLGDILVFR YEGNMEFEVM IFDSSHCNRE YAEYLQEEEA AATHTFGEAS 120 KNFEFEDTNN YASIPSGDQL YESSPSMSCY LIHSRNTDDV IEIPSPGIKL SDEDSSHAEA 180 ASDKHVGHSH FVCTIKPYCL TYGYLYLPQQ FANGLSNKKG NLIIRDERQR LWNLKLSSDY 240 KKRVRIGDGW RKFIADNRLK EGDRIVFEVV TDEETSIWKF HVVTNAKTPM RKFQGGHGLE 300 PWKQPLAEIP SPDNVVEIPS PGIKSSDEDS SHAETATDKH VGHSHFVCTI KPYCLTYGYL 360 YLPQPFANGL SNKECDLIIR DERQRLWNLK LSSDCKNRVR IGDGWRKFIV DNRLKKGDRI 420 MFEVVTDEES IWKFHAVTNA ETPMRKFQEK PEPNIMSSYK AFPDVEAAKD MPLSHPDHFI 480 STVKPHHISK CRMHVPKLFA RENGLSNRQC TIVIRDYEQR SWEFRLYSSC AGSTFIGGEW 540 RKFCAANFLK EGDCIMFEIF AKGEKPILKF YDLRANASLQ PEEWKPNLDA KRVST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767532.1 | 0.0 | PREDICTED: B3 domain-containing protein REM9-like isoform X2 | ||||
Refseq | XP_016504089.1 | 0.0 | PREDICTED: B3 domain-containing protein REM9-like isoform X2 | ||||
TrEMBL | A0A1S4CSU2 | 0.0 | A0A1S4CSU2_TOBAC; B3 domain-containing protein REM9-like isoform X2 | ||||
TrEMBL | A0A1U7VHH9 | 0.0 | A0A1U7VHH9_NICSY; B3 domain-containing protein REM9-like isoform X2 | ||||
STRING | XP_009767530.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 8e-41 | B3 family protein |