PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503812.1
Common NameAGP5
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 342aa    MW: 37491 Da    PI: 6.5131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-18242275134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_016503812.1 242 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 275
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.0E-743328IPR016679Transcription factor, GATA, plant
SMARTSM004013.7E-17236286IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.213236272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.7E-15240273IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.55E-15240299No hitNo description
CDDcd002027.05E-16241298No hitNo description
PfamPF003205.4E-16242275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGSNLVDEID CGSFFDHIDD LIDFPLENES AGLSSTDCKD FPSIWNDPLP DSDSLFSGSH  60
RNSASDFSAE LSVPYEDIVQ LEWLSTFVED SFSGGGLTLG KENFPLYKET SEAKFQTSSP  120
VSVLESSSSS SSSSCSVEKT VPLSSPCHRG PQRARSKRPR PATFNPAPVI QLISPTSSFT  180
EIPQPFVARG IASESENFAE SPMKKILKPA VAEQKKKKLK LSFPSARVEA NQNPVAQTIR  240
KCQHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SIHSNSHKKV  300
IEMRTKFVPD NNANIARTAP PATVTQPEFN PSNKESVEEE NK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076930.0AB107693.1 Nicotiana tabacum AGP5 mRNA for AG-motif binding protein-5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503811.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016503812.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016503813.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1S4CRV80.0A0A1S4CRV8_TOBAC; GATA transcription factor
STRINGXP_009598426.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-41GATA transcription factor 5
Publications ? help Back to Top
  1. Sugimoto K,Takeda S,Hirochika H
    Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2.
    Plant J., 2003. 36(4): p. 550-64
    [PMID:14617085]