PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 342aa MW: 37491 Da PI: 6.5131

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.2	2.2e-18	242	275	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG++y++ + XP_016503811.1 242 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 275 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	5.0E-74	3	328	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	3.7E-17	236	286	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.213	236	272	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.7E-15	240	273	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	8.55E-15	240	299	No hit	No description
CDD	cd00202	7.05E-16	241	298	No hit	No description
Pfam	PF00320	5.4E-16	242	275	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	242	267	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGSNLVDEID CGSFFDHIDD LIDFPLENES AGLSSTDCKD FPSIWNDPLP DSDSLFSGSH 60 RNSASDFSAE LSVPYEDIVQ LEWLSTFVED SFSGGGLTLG KENFPLYKET SEAKFQTSSP 120 VSVLESSSSS SSSSCSVEKT VPLSSPCHRG PQRARSKRPR PATFNPAPVI QLISPTSSFT 180 EIPQPFVARG IASESENFAE SPMKKILKPA VAEQKKKKLK LSFPSARVEA NQNPVAQTIR 240 KCQHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SIHSNSHKKV 300 IEMRTKFVPD NNANIARTAP PATVTQPEFN PSNKESVEEE NK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGSNLVDEID CGSFFDHIDD LIDFPLENES AGLSSTDCKD FPSIWNDPLP DSDSLFSGSH  60
RNSASDFSAE LSVPYEDIVQ LEWLSTFVED SFSGGGLTLG KENFPLYKET SEAKFQTSSP  120
VSVLESSSSS SSSSCSVEKT VPLSSPCHRG PQRARSKRPR PATFNPAPVI QLISPTSSFT  180
EIPQPFVARG IASESENFAE SPMKKILKPA VAEQKKKKLK LSFPSARVEA NQNPVAQTIR  240
KCQHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SIHSNSHKKV  300
IEMRTKFVPD NNANIARTAP PATVTQPEFN PSNKESVEEE NK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	160	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB107693	0.0	AB107693.1 Nicotiana tabacum AGP5 mRNA for AG-motif binding protein-5, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503811.1	0.0	PREDICTED: GATA transcription factor 8-like
Refseq	XP_016503812.1	0.0	PREDICTED: GATA transcription factor 8-like
Refseq	XP_016503813.1	0.0	PREDICTED: GATA transcription factor 8-like
TrEMBL	A0A1S4CRV8	0.0	A0A1S4CRV8_TOBAC; GATA transcription factor
STRING	XP_009598426.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2345	23	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	2e-41	GATA transcription factor 5

Publications ? help Back to Top
Sugimoto K,Takeda S,Hirochika H Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2. Plant J., 2003. 36(4): p. 550-64 [PMID:14617085]