PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016503459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28738.7 Da PI: 8.6384 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_016503459.1 73 FSCSFCKREFSTSQALGGHQNAH 95 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 63 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.04E-6 | 70 | 100 | No hit | No description |
PROSITE profile | PS50157 | 11.552 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKGKVMDLGS ELKPHELSSA GVLLDLKVHN GASNLELNLF NLTSSIKNSA PASESSNEGT 60 PNKQRRSSET RVFSCSFCKR EFSTSQALGG HQNAHKQERA LAKRRNALVD VVSPFGPPNY 120 HTYYNPYSSY TTHLPFHGSF TSRSSLGVQG HSSAIHKPSP YNPWSAFSGY NYRFNPEKWS 180 SSGSSLFRTE NLGIGSAPLE NSLKFENKNS AKGFSVRDSP VKVDNNRDGN NKRKMGFVEE 240 DAEENEEESE IDLDLNLRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016503459.1 | 0.0 | PREDICTED: zinc finger protein 4-like | ||||
TrEMBL | A0A1S4CR18 | 0.0 | A0A1S4CR18_TOBAC; zinc finger protein 4-like | ||||
STRING | XP_009600727.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3967 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 8e-23 | zinc finger protein 3 |