PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016503427.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 342aa MW: 36582.5 Da PI: 11.2595

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C k Fs++ L H+ +H XP_016503427.1 19 YRCDNCRKLFSSSQALAGHQHLH 41 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.91E-5	18	44	No hit	No description
PROSITE profile	PS50157	10.783	19	46	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.7E-4	19	41	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	21	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MADETNNYNT TSQGPIVVYR CDNCRKLFSS SQALAGHQHL HKVQGTWVKS HHHKFLLPPH 60 YLPDLNRFIA RNNKSITVRN RGRGKPRTFF EPQPMVQEPL AVAPAPAVAT PLLAQALVPA 120 PTPVVPHRGR PVIQPQPTVQ VPLAAPVPAP ATSLLDQAPA LPLAAAPAPA TPLLAQVPAP 180 ALQLAVAPAP ATPLLAQAPV ARCRGRPRSI IRPQPMAEAP LAAAPTPATP LLVQAPAPAP 240 VARPRGRPRS IIRSQPMVQV PLAAAPAPAT PLLVQGPDPI ARLENQLALF QNRLNYFKGV 300 AARREESTHS STGSTNTITV DKTNGKKKVE EKVEELDLEL RL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MADETNNYNT TSQGPIVVYR CDNCRKLFSS SQALAGHQHL HKVQGTWVKS HHHKFLLPPH  60
YLPDLNRFIA RNNKSITVRN RGRGKPRTFF EPQPMVQEPL AVAPAPAVAT PLLAQALVPA  120
PTPVVPHRGR PVIQPQPTVQ VPLAAPVPAP ATSLLDQAPA LPLAAAPAPA TPLLAQVPAP  180
ALQLAVAPAP ATPLLAQAPV ARCRGRPRSI IRPQPMAEAP LAAAPTPATP LLVQAPAPAP  240
VARPRGRPRS IIRSQPMVQV PLAAAPAPAT PLLVQGPDPI ARLENQLALF QNRLNYFKGV  300
AARREESTHS STGSTNTITV DKTNGKKKVE EKVEELDLEL RL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503427.1	0.0	PREDICTED: predicted GPI-anchored protein 58
TrEMBL	A0A1S4CQ95	0.0	A0A1S4CQ95_TOBAC; predicted GPI-anchored protein 58

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21