PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016503104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27785.6 Da PI: 6.5107 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.4 | 1.5e-14 | 68 | 114 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRRdriN +++Lr+l+P + +K++Ka+ L+ +ve++k+L XP_016503104.1 68 RSHSEAEKRRRDRINAQLSTLRKLIPMS-----EKMDKAALLRSVVEHVKDL 114 78*************************8.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.323 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-14 | 68 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-12 | 68 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.44E-11 | 68 | 116 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 68 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-13 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.5E-4 | 153 | 219 | No hit | No description |
CDD | cd04873 | 2.54E-6 | 153 | 215 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMDNSSCSEY WPEIETETHF HHFQEVAASP FLLPLVPNSC DDTSFQLYEN PCYWSQQFEE 60 DTSASASRSH SEAEKRRRDR INAQLSTLRK LIPMSEKMDK AALLRSVVEH VKDLKERAKE 120 ISKVVNTPTD IDEVIIEHLD EDENSSNSII LKVCLSCDDR PELFSELNRA LKNLKLTTEE 180 ANITSLGVRI KCVFVLKSVN GVCLNSLKQS LRVVLSRIAI SLSTSNYRIK SKRQRFFLPA 240 NFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 229 | 234 | KSKRQR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 3e-36 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009632043.1 | 1e-179 | PREDICTED: transcription factor bHLH51-like | ||||
Refseq | XP_016503104.1 | 1e-179 | PREDICTED: transcription factor bHLH51-like | ||||
TrEMBL | A0A1S4CQ59 | 1e-177 | A0A1S4CQ59_TOBAC; transcription factor bHLH51-like | ||||
STRING | XP_009632043.1 | 1e-178 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5820 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-37 | bHLH family protein |