PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016502614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 37737 Da PI: 4.9045 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.4 | 3.4e-15 | 129 | 180 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++Y+k+L+ XP_016502614.1 129 QRMTHIAVERNRRKQMNEYLSVLRTLMPQS---YVQRGDQASIVSGAINYVKELE 180 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.14E-15 | 127 | 184 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-15 | 127 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.005 | 128 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-17 | 128 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-12 | 129 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-11 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MALEAVTQQQ QYLYALLGTA NWDGGSGSGS GFDYHNNEAF EYLENNQNVG EAQEYEDYSN 60 WNLPPPLLVD SQNDFNQWGQ NSSTYVLDHN FTIPDQLLQL ESPVEMSSTT RPRRRRTRSK 120 KNQEEVESQR MTHIAVERNR RKQMNEYLSV LRTLMPQSYV QRGDQASIVS GAINYVKELE 180 QQLQFLSGQK HSNDEKLQNV MGGETSPFSE FFSIPQYSTT MTAATSENGG SGNEYYRNQQ 240 LAATADIEVT MVENHANLKI RSKRRPRLLP RIISGLESLR LSVLLLNVSK VDQFVLCSLS 300 LKVEEDCKLS SVEDIAAVVN QILGRIHEEA LLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 117 | RPRRRRTR |
2 | 129 | 140 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233133 | 1e-104 | AC233133.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-104 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016502614.1 | 0.0 | PREDICTED: transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 6e-70 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A1S4CNR6 | 0.0 | A0A1S4CNR6_TOBAC; transcription factor bHLH96-like | ||||
STRING | XP_009617734.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13227 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 9e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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