PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502548.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 353aa    MW: 39792 Da    PI: 7.8555
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.1e-06426326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++lC+ffa  G C  G+ C F+H+
  XP_016502548.1  4 RVLCKFFAH-GACLKGEHCEFSHD 26
                    89***6666.*************5 PP
2zf-CCCH23.59.4e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G C yG+rC++ H+
  XP_016502548.1 34 VCTYYQK-GACAYGSRCRYEHV 54
                    5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089128IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6952956IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-53055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0013453IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.958132159IPR000571Zinc finger, CCCH-type
SMARTSM003560.33133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.5E-9194259IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.79E-11195264No hitNo description
CDDcd001620.00195200259No hitNo description
PfamPF000974.5E-6201257IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001846.6E-7201257IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.209201258IPR001841Zinc finger, RING-type
PROSITE patternPS005180225234IPR017907Zinc finger, RING-type, conserved site
Gene3DG3DSA:4.10.1000.106.0E-4283317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.047287316IPR000571Zinc finger, CCCH-type
SMARTSM003560.11287315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSQRVLCKFF AHGACLKGEH CEFSHDWKTS PNNVCTYYQK GACAYGSRCR YEHVKLSRSQ  60
PSAQSSAQPQ QYLLSSSVST NVPPGTRAQN VGLVPGIYAE YSASSKPAWN QNSELHDTLD  120
DDDMIELRSV NPADRSICAF AAAGNCHRGE KCPHIHGDLC PTCGKHCLHP SRPQEREEHV  180
KTCENRQKHI DLLKRSQEIE CSVCLECVLS KSTAAERKFG ILSECDHPFC ISCIRNWRGS  240
SSSGMDVNSA LRACPICRKL SYFIIPSVIW YFTKEEKEKI VDNYKTKLRS IDCKHFDFGS  300
GTCPFGTSCF YKHQYRDGRL EEVVLRHLGS EDGNTVIAKD IRLSDFLSNL EIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1717320.0AC171732.2 Solanum lycopersicum chromosome 10 clone C10HBa0111D09, complete sequence.
GenBankAC2402280.0AC240228.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-141c17 map 10, complete sequence.
GenBankAC2445790.0AC244579.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g5 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502548.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-168C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S4CMS70.0A0A1S4CMS7_TOBAC; zinc finger CCCH domain-containing protein 69-like
STRINGXP_009627500.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-151C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]