PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502025.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 374aa    MW: 42288.3 Da    PI: 6.0169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.83e-126235811373
            GRAS  11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
                     a+ s++ + +++l+arl elasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsPi+kf h+t N+ +l+a
  XP_016502025.1   2 AIGSRNVTGVNQLIARLGELASPRGSPICRLTAYFTEALALRVARIWPHIFHIIPPRDLD-RLDDDSSTALRLLNQVSPIPKFIHFTSNEILLRA 95 
                     7889999***************************************************98.5678888999************************ PP

            GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                     +eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef++ v++rled++l++L+vk+gE
  XP_016502025.1  96 FEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEFHP-VVDRLEDVRLWMLHVKEGE 185
                     ********************************************....9**************************.7****************** PP

            GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                     ++aVn++lq+hrll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+fds+  +lp++s  rik+E+  ++r+i+
  XP_016502025.1 186 SVAVNCALQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAVFDSIGFSLPPDSPSRIKIEEL-FARDIR 277
                     *************966655444..79************************************************************98.****** PP

            GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                     n++aceg++r+erhe ++kWr+ +e+ GF+ + ++e++  q ++ll++++ + +rv    +++++l+l W d+pL +vSaW
  XP_016502025.1 278 NIIACEGRDRTERHECFGKWRKLMEQGGFRCAGITERELLQSQMLLKMYSCEDFRVIkqgNDDAALTLSWLDQPLCTVSAW 358
                     **************************************************88899984445589999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.1941336IPR005202Transcription factor GRAS
PfamPF035141.1E-1232358IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
EAIGSRNVTG VNQLIARLGE LASPRGSPIC RLTAYFTEAL ALRVARIWPH IFHIIPPRDL  60
DRLDDDSSTA LRLLNQVSPI PKFIHFTSNE ILLRAFEGKD RVHIIDFDIK QGLQWPSLFQ  120
SLASRPNPPT HVRITGIGES KQDLVETGDR LAEFAEALNL AFEFHPVVDR LEDVRLWMLH  180
VKEGESVAVN CALQMHRLLY DSSGGILRDF LGLIRSTNPT IILMAEQEAE HNEPSLEARL  240
VNSLRYYAAV FDSIGFSLPP DSPSRIKIEE LFARDIRNII ACEGRDRTER HECFGKWRKL  300
MEQGGFRCAG ITERELLQSQ MLLKMYSCED FRVIKQGNDD AALTLSWLDQ PLCTVSAWSP  360
LDAAGSSSSY YQRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-75136027379Protein SCARECROW
5b3h_D2e-75136027379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782602.10.0PREDICTED: scarecrow-like protein 28
RefseqXP_016502025.10.0PREDICTED: scarecrow-like protein 28, partial
SwissprotQ9CAN31e-175SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A1S4CLM70.0A0A1S4CLM7_TOBAC; scarecrow-like protein 28
TrEMBLA0A1U7WRP60.0A0A1U7WRP6_NICSY; scarecrow-like protein 28
STRINGXP_009782602.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-157GRAS family protein