PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501918.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 568aa    MW: 62571.2 Da    PI: 6.6202
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30225282260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK v+g+ef+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k
  XP_016501918.1 225 EDGYNWRKYGQKLVRGNEFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 282
                     8****************************************.***************85 PP
2WRKY1054.1e-33400458159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+
  XP_016501918.1 400 VNDGHRWRKYGQKFVKGNPNPRSYYRCSIAGCPVKKHVERASHDPKMVITTYEGQHDHT 458
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.436219283IPR003657WRKY domain
SuperFamilySSF1182902.35E-24221282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-26221282IPR003657WRKY domain
SMARTSM007746.3E-34224282IPR003657WRKY domain
PfamPF031064.2E-23225281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-34386458IPR003657WRKY domain
SuperFamilySSF1182901.44E-28392459IPR003657WRKY domain
PROSITE profilePS5081133.66395460IPR003657WRKY domain
SMARTSM007742.6E-38400459IPR003657WRKY domain
PfamPF031062.6E-26401457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MYWIMGTPRE EATNKVPSEN LQPKPDTDPD PATNNPELKE KGSCESISAD VVSGELQKRL  60
SPATDAQASK SNQEETTHPS TCQDVSNNVS QSNQEDISLS KVQEYQSETV RQKQGLKSEG  120
DASGCSHLLI LPKDSDAKSC GSESGVIEKV VSPLSNKASN SSDQIQSQTM EVVVSRSDQQ  180
LVTYPARPEK TLDKLQPRRN PDTSGHGLPS DRGNTLFKLP EKPLEDGYNW RKYGQKLVRG  240
NEFTRSYYKC TYPNCLAKKQ VERSHDGHIT DVHYIGKHEH PKTPSGPQTP PGLVVPLQMR  300
QPDIPMLTAS EEAEGEKSTV PGETCEPSKP SEAPLALDIV SPAMQVTPLK PHKLENEVDK  360
NRGPDSKRQK KDIAKDDTPP IKSHSEPRHI VQTVSEVDIV NDGHRWRKYG QKFVKGNPNP  420
RSYYRCSIAG CPVKKHVERA SHDPKMVITT YEGQHDHTMS WFRTLSQITA APDLSLTGVS  480
GESRLESGET KHVSQSGETK HIGESKVESG ENKHVGESKS ESGENKHVGE SKSESGENKH  540
VGESRIESGE SGENKHVNID MVVHIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-31215459275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0962980.0AF096298.1 Nicotiana tabacum DNA-binding protein 1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501918.10.0PREDICTED: WRKY transcription factor 1-like isoform X1
TrEMBLA0A1S4CL180.0A0A1S4CL18_TOBAC; WRKY transcription factor 1-like isoform X1
STRINGXP_009775524.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-70zinc-dependent activator protein-1