PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501840.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 304aa    MW: 33965.5 Da    PI: 7.9548
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.2e-3275131360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+e+e e
  XP_016501840.1  75 IVRYKECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEMEGE 131
                     68**************************9.999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-2976128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2676139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-3177128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.50678127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-28225293IPR009057Homeodomain-like
SuperFamilySSF466893.59E-18226292IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-26231287IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MELPIQEEEM PMPINSTYVG GGEGHGHGHI IHHDPTPVPN NTNHIIPSSV ANSINGPPIE  60
ATPVSADHHV PYKKIVRYKE CLKNHAAAMG GNATDGCGEF MPSGEEGTIE ALICSACNCH  120
RNFHRKEMEG EQQLLQLPPS SCDYYNLNRG GKKVYLGHSH NHHKGLLGPE PFGTIIPSRA  180
AAPHHHQMIM SYNNMGSLPS ESEEHEDING GGGVMAMAMA RPLHHHNQIV KKRFRTKFTQ  240
EQKEKMFNFA EKVGWKIQKQ EETVVQQFCQ ELGIKRRVLK VWMHNNKHSL AKKNSNSTIP  300
QNQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-242322891875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-50HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613099.10.0PREDICTED: zinc-finger homeodomain protein 4
RefseqXP_016501840.10.0PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_016501841.10.0PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018629726.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-74ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1S4CL460.0A0A1S4CL46_TOBAC; zinc-finger homeodomain protein 4-like
STRINGXP_009613099.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-72homeobox protein 31