PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501773.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 695aa    MW: 77703.4 Da    PI: 7.7318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-057697223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC++C++ F  + n++rH+r+H
  XP_016501773.1 76 KCEKCSREFYAPINYRRHMRLH 97
                    7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4327597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MSVAKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ  60
DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSVDEIKEVV SLHDVSIKDL AGSSLVNDLA TSLQKMVIWA HPQDYYKAGL ALLEVIQGKP  180
SKLPITSQEL FSILDDASEK TFLCAGTAES VQKYVFDGYA AKKGLELKNL VACASFLFEQ  240
KLVKAWFADK DAEAMRCQKL LFEEEEAAQK RQAELLERKK LKKLRQKEQR AREQSNWERG  300
DLEVPADSFE GPIAESSVRS AAASESSSST PEVSDDISSC LELVQFTNNE NMDIEAQLNI  360
SHPHLDLVEI QDVEPPPVSA NSRRHFPHTQ WQVAKSQRTG RNGFRNSQNH EVQKLEPVQK  420
HGVIKDRGAP VNGSKIWTRK IRVQNGERLR LDPQKEAIDQ DQSNCEVMIG SISVPMKNCS  480
THGQGNCPTV EKDNFESTEP AMLQKLNHVQ KPAKHDVLQD GSNGAAVKLW RPVSRHGSGQ  540
QDPGEDVIFV KLDNRTSSTE NNLRLCSRDN PTGKSKNYTC QVSDGNVFQG LGFCSVSAKA  600
FLSQRWKEAI SGDHVRLVLS DDTEVSGQSD MQNGSSEAAL SYADQDHGIL VKADNQQANT  660
GDLSFSSNGN TKVKFRQKPD KSTKIKYIPK QKQNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKKLKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501769.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501770.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501771.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501772.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501773.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501774.10.0PREDICTED: uncharacterized protein LOC107820069
TrEMBLA0A1S4CKL20.0A0A1S4CKL2_TOBAC; uncharacterized protein LOC107820069
STRINGXP_009589941.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.15e-91C2H2-like zinc finger protein