PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016501699.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 91aa MW: 10699.4 Da PI: 10.6148

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016501699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.3	2.4e-12	1	50	36	87
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++l+de+ r W v++ + ++ +t+GW++F +an++++gD+ F+l+++ XP_016501699.1 1 MILRDEKQRLWPVQV--GPVGHQFSITRGWRQFREANNVQVGDTYKFELIDN 50 579**********..999999***********************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02362	1.4E-10	1	52	IPR003340	B3 DNA binding domain
CDD	cd10017	3.05E-10	1	60	No hit	No description
PROSITE profile	PS50863	12.802	1	61	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.08E-14	1	59	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-13	1	59	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MILRDEKQRL WPVQVGPVGH QFSITRGWRQ FREANNVQVG DTYKFELIDN GTIPVAHFHC 60 KYLGRMSSIR VVIDNVKKQL VIGKENEHRR I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016501699.1	1e-62	PREDICTED: B3 domain-containing protein REM1-like
TrEMBL	A0A1S4CL83	2e-61	A0A1S4CL83_TOBAC; B3 domain-containing protein REM1-like
STRING	Solyc08g006190.1.1	4e-28	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	5e-07	B3 family protein