PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016501194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 283aa MW: 32468.4 Da PI: 9.1744 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.8 | 7.2e-17 | 15 | 104 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk++ + + ks l++p +f+++++++ ++ + tl+ +sg +W+vkl ++ ++ +GW++F k+n+++ g+f++F++dg +f +++ XP_016501194.1 15 FFKIF--NPTVKSE-LRIPAHFLRHISED--SPDKATLKCLSGGTWNVKL--HIDENGLLINQGWEKFHKDNHIEGGEFLLFRYDGALQF--TIR 100 77777..5555555.9*******999766..5668***************..888888**************************997777..999 PP EE-S CS B3 96 vfrk 99 +f+k XP_016501194.1 101 IFSK 104 9987 PP | |||||||
2 | B3 | 72.1 | 7.2e-23 | 180 | 272 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l+ +v+ks+ +++pk+ +e+ +++ ++++t++l +++g++W+v++i +k g + + +GWk+Fvk+n+LkegD++vF+l++ + el+v+ XP_016501194.1 180 FVKCLKGYNVNKSCFIYVPKPLCEQLSES-ANKTTVVLSNSEGKQWKVNCILQK--GYHAFCGGWKQFVKDNKLKEGDVCVFQLVN--TNELKVS 269 788899999**************999655.4667****************5555..5578899********************987..5556999 PP EE- CS B3 96 vfr 98 vf+ XP_016501194.1 270 VFD 272 998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-20 | 12 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.493 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.32E-20 | 13 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.94E-14 | 15 | 103 | No hit | No description |
SMART | SM01019 | 1.0E-14 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-15 | 15 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-26 | 175 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-24 | 175 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.43E-23 | 178 | 272 | No hit | No description |
PROSITE profile | PS50863 | 15.481 | 180 | 274 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-16 | 180 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-21 | 180 | 272 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MTENALKKID RRAVFFKIFN PTVKSELRIP AHFLRHISED SPDKATLKCL SGGTWNVKLH 60 IDENGLLINQ GWEKFHKDNH IEGGEFLLFR YDGALQFTIR IFSKNGMERE VKSINMDKNQ 120 KASIFDMDKN QKMPPKYPYN SKFPKQTHVD VENGTEHETP RKKVALEKTE VLLTPDIPQF 180 VKCLKGYNVN KSCFIYVPKP LCEQLSESAN KTTVVLSNSE GKQWKVNCIL QKGYHAFCGG 240 WKQFVKDNKL KEGDVCVFQL VNTNELKVSV FDDPPESLLK LAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016501194.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A1S4CJU2 | 0.0 | A0A1S4CJU2_TOBAC; B3 domain-containing protein Os11g0197600-like | ||||
STRING | XP_009613237.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-21 | B3 family protein |