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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016500955.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 229aa MW: 25886.4 Da PI: 7.9669 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.9 | 1e-32 | 50 | 104 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k +YkeClkNhA+ +GghavDGCgEfmp+ ge+gt +alkCaAC+CHRnFHR+e++ XP_016500955.1 50 KPKYKECLKNHAVGIGGHAVDGCGEFMPA-GEDGTLDALKCAACNCHRNFHRKETQ 104 679*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.1E-30 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.5E-31 | 52 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-23 | 52 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 53 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-27 | 151 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.09E-16 | 154 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.5E-24 | 159 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEFETQEDQK EIKASPNYNS VLEISNSTNE PKMPSNSDEL ILDAPLQMRK PKYKECLKNH 60 AVGIGGHAVD GCGEFMPAGE DGTLDALKCA ACNCHRNFHR KETQLHHLPY YGTPPCGYVQ 120 HVLPPQRPLA LPSTSGGGAG GGYREDQEEL CNPNNSVTKK RFRTRFNQEQ KEKMLELAEK 180 LGWRIQRQDE GVVQQLCNEI CIKRHVFKVW MHNNKLTLGK KTLIQSTNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-21 | 158 | 215 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016500955.1 | 1e-173 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 5e-67 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 5e-67 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1S4CID2 | 1e-172 | A0A1S4CID2_TOBAC; zinc-finger homeodomain protein 2-like | ||||
STRING | XP_009596948.1 | 1e-172 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-65 | homeobox protein 22 |
Publications ? help Back to Top | |||
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