PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500806.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 331aa    MW: 36395.7 Da    PI: 9.5375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043173195223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      C+ Cg+ F   +nL+ H+ + H
  XP_016500806.1 173 ICSECGEIFMKLENLELHQAVrH 195
                     5******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.515172200IPR007087Zinc finger, C2H2
PROSITE patternPS000280174195IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.106.5E-8185329IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563994.22E-16195330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAKSKRNPSI KRSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK  60
IPKCEGERRD DDNNNDKKCK KMKCSGSICS NTKVMHRPEP SPSPPKGRSC KNDGSTKVNL  120
NNSFSSASSS LHSASSPATS SLRGMPFRKL SGCYECRMVV DPIARDPSLR STICSECGEI  180
FMKLENLELH QAVRHADGNE LLRFLCTTFI CSLGLNGSSN LCTLPNCNVC TIIKNGFKLA  240
TTDGTKKGIL TTATSGKAHD STRVVSHDDN DKRAMLVCRV IAGRVKKTLD GNLEEFDSIA  300
GAAGVYSNLD ELYVFNPKAI LPCFVVIYKG F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754505e-42HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755235e-42HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500806.10.0PREDICTED: uncharacterized protein LOC107819234 isoform X2
TrEMBLA0A1S4CII50.0A0A1S4CII5_TOBAC; uncharacterized protein LOC107819234 isoform X2
STRINGXP_009587911.11e-113(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-37C2H2-like zinc finger protein