PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016500065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 473aa MW: 51997.3 Da PI: 7.6945 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.4 | 1.1e-06 | 10 | 49 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 r C+ ++++ + l+C+ ++ lC C ++ H+ H XP_016500065.1 10 RPCDFCNQQIAVLYCRADSAKLCLFCDQHVHSAnalskkH 49 78***************************99545555555 PP | |||||||
2 | zf-B_box | 25.1 | 3.6e-08 | 52 | 93 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvpl 42 ++C++++++++++ C +++ lC++C H + H+++p+ XP_016500065.1 52 SQICDNCGSEPVSIRCATDNLVLCQECDWDAHGScaHDRTPV 93 579**************************99*5599998875 PP | |||||||
3 | CCT | 64.1 | 4.2e-22 | 425 | 468 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ XP_016500065.1 425 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 468 7789**************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.399 | 7 | 54 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.4E-11 | 7 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.27E-7 | 10 | 42 | No hit | No description |
PROSITE profile | PS50119 | 9.599 | 50 | 93 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-5 | 53 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.58E-8 | 54 | 93 | No hit | No description |
SMART | SM00336 | 1.5 | 55 | 93 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.8E-16 | 425 | 467 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.912 | 425 | 467 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MSQRSSGDSR PCDFCNQQIA VLYCRADSAK LCLFCDQHVH SANALSKKHI RSQICDNCGS 60 EPVSIRCATD NLVLCQECDW DAHGSCAHDR TPVEGFSGCP CASELASAWG LDIEAKKPPT 120 PTHLQPTWNG FLEPCNWMCK DVIPPPSSVL LKDLMVPNAN NNNSGIYSTT REVGRKQNPT 180 CGKQKQVILK QLIELFKRDL ADGVGGGSED LVPKTPNGSS DWQGNVNVTE GSDAVMGGVN 240 QQLEPQSVPF TSLLMMQKPH NSKNSDRMVE GNILSSGNSY VQNTQIWDFN LGQLRSHEQS 300 SSVEADYSES DMAYMMKSYG ELIKGTSLAT SKGLELSGIN RSVAHEDMTA FSNNSNNRGG 360 SQGPATSESN NLPIIKLSSD SGYAKRKCCG VSKDLNFMEQ SIFVGGENTG EEILKADMEL 420 LAKNRGNAMQ RYKEKKKTRR YDKHIRYESR KARADTRKRV KGRFVKANEA PDG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 6e-76 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 6e-76 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799598.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 14-like | ||||
Refseq | XP_016500065.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 14-like | ||||
TrEMBL | A0A1S4CFW6 | 0.0 | A0A1S4CFW6_TOBAC; zinc finger protein CONSTANS-LIKE 14-like | ||||
TrEMBL | A0A1U7Y913 | 0.0 | A0A1U7Y913_NICSY; zinc finger protein CONSTANS-LIKE 14-like | ||||
STRING | XP_009799598.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6703 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.2 | 5e-98 | B-box type zinc finger protein with CCT domain |