 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016500042.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 340aa MW: 38529.9 Da PI: 4.4833 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016500042.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.5 | 1.1e-18 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k
XP_016500042.1 60 KKRRLRVDQVKALEKNFEVENKLDPERKVKLAQELGLQPRQVAIWFQNRRARWK 113
45578899*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.4 | 6.1e-41 | 59 | 150 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl +qvk+LE++Fe e+kL+perKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L++++e+L +e+
XP_016500042.1 59 EKKRRLRVDQVKALEKNFEVENKLDPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLQHDNEALLKEIC 150
69*************************************************************************************99885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MKRVRSSDSL GVPLMSMCQN TTDDHHQWNS QVYSRDFQSM LELGLDEEAC VEESGHGSEK 60
KRRLRVDQVK ALEKNFEVEN KLDPERKVKL AQELGLQPRQ VAIWFQNRRA RWKTKQLERD 120
YNVLKANFDS LKHNYESLQH DNEALLKEIC ELKSKQNGGN NESKADVKEE AIESETDDKY 180
IDQSKPNNST TLGNCEDDST ELNFESFNGG NGTINDSNIF ADFKDGSSDS DSSAILNEEN 240
SPNYAAISSS GAFLISNNGG SNSSSSNSSL NCFQFFDSNP KAILGDAKDK VFCNNQPQFV 300
KMEEHNFFSS EESCSTLFAD EQAPTLHWYC PEDWNNWKDS
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 107 | 115 | RRARWKTKQ |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975444 | 9e-90 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
