PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016499457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 30299.4 Da PI: 5.2351 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.7e-11 | 167 | 214 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_016499457.1 167 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 214 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.20E-9 | 161 | 218 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-18 | 161 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 163 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-8 | 167 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 169 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTDLLEAAAN 60 SVNESTVTEQ SGRSGGGGGT AAVRKRDVNS EDDSSKLVST SDANDLQDGS VAKRQKASES 120 KEENGGSKVE AESSSRTVNK GTEQSSKPEP PKDYIHVRAR RGQATDSHSL AERARREKIS 180 ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MSHPIDTFPS 240 KDLAPSAFDA TGMIFGAQAP REYAQGAQSE WLHMQVGSSF DRAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631983.1 | 0.0 | PREDICTED: transcription factor bHLH79 isoform X1 | ||||
Refseq | XP_016499457.1 | 0.0 | PREDICTED: transcription factor bHLH79-like isoform X1 | ||||
Swissprot | Q9LV17 | 7e-85 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A1S4CE19 | 0.0 | A0A1S4CE19_TOBAC; transcription factor bHLH79-like isoform X1 | ||||
STRING | XP_009631983.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1287 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 2e-84 | bHLH family protein |
Publications ? help Back to Top | |||
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