PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016499332.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 313aa    MW: 34935.4 Da    PI: 8.325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016499332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016192214123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+k+ +++  L +H   H
  XP_016499332.1 192 YQCEICNKVLKSSQALGSHKTIH 214
                     9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.17E-5432No hitNo description
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-8629IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576677.26E-9192260No hitNo description
SMARTSM003550.021192214IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-6192215IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598192219IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
PfamPF139123.0E-9237260IPR007087Zinc finger, C2H2
SMARTSM003550.17238260IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203238260IPR007087Zinc finger, C2H2
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR TLPLPPKTPP QKQDSAGRSE STLSLHSLKE  60
EEEEEIREEK YLGYGLRENP KKSCKIVDPE FLDGAGSVVV HDNESETEST KKPTRRRSKR  120
TRRMFISEQE AVEVKKEKSA EFEPELEPVS SFSDTSPEED IAICLMMLSK DVWRSSYGSD  180
ESKCRNQKQG KYQCEICNKV LKSSQALGSH KTIHKIEGIK SKENSRQLRV KNVDQKVHEC  240
PFCGKIYGSG QALGGHKRSH ILSSSTTASS SSKVGDSLMD SSSAKFPNGF IDLNMPAPIE  300
DEDFSQPEVS GVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499332.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4CDN70.0A0A1S4CDN7_TOBAC; zinc finger protein ZAT9-like
STRINGXP_009615913.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-30C2H2-like zinc finger protein