PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016499255.1 | ||||||||
Common Name | Mads111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 593aa MW: 65856 Da PI: 4.2753 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.8 | 9.2e-16 | 14 | 52 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 snr +s+R++g+lKKA+ELSvLCd+++ + +fs+ gk XP_016499255.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPGGK 52 788889******************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-17 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.311 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.58E-16 | 2 | 84 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-18 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-14 | 14 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPG GKPSVYKSDN 60 SSFEDMITTK FAEVNPEERA KRKMECLDTI KKACKKYDHD VDIGEQLCPG DLTTADINFL 120 SQSLRIRLSD IEGRLRLWKN LDKIDSIQQL RKLENSISKS LNEIAKHKCG MGSLIFGAGQ 180 DFQPSSARHG MDSPLNFDAR KELHPCSSVH ACDSENIDVN EGMNSFDSSL LCDTGQDFQT 240 TSLMQHGMNL GQELYQCSSV HGGNSENMDV YEDLNSFPLE YLEESSFSFE SYTNLVCNKE 300 IEVSMPESVN FVPDEIFLDC EVNQEDIVTD FGFTFDVPQL EQTDDQGNAF DYNINKGSRL 360 PHSDLVNIHD SSKSASGTCE KMILAKSLHF LYGMDSSSSD AGEEFSTASS IKHGINLSST 420 QLDAGLSVNG GDSENMDDYE DLNAFDSCLK FDDEHEFQSS SSIGHYSMNS PVSFDAGQEL 480 HRSSSVNGGD SESINGYGDL NLFVQGFLDD PSLSIESCTD LACNHEVENY KPGYENCSAD 540 KIFLDCQLNQ ENIEMAFKSN LDLPLVEQMD VQESTFDCLN KGFGFPLLTS ILV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY183721 | 0.0 | AY183721.1 Nicotiana tabacum MADS box protein (Mads1;11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016499254.1 | 0.0 | PREDICTED: uncharacterized protein LOC107817880 | ||||
Refseq | XP_016499255.1 | 0.0 | PREDICTED: uncharacterized protein LOC107817880 | ||||
Refseq | XP_016499257.1 | 0.0 | PREDICTED: uncharacterized protein LOC107817880 | ||||
Refseq | XP_016499258.1 | 0.0 | PREDICTED: uncharacterized protein LOC107817880 | ||||
Refseq | XP_016499259.1 | 0.0 | PREDICTED: uncharacterized protein LOC107817880 | ||||
TrEMBL | A0A1S4CDN8 | 0.0 | A0A1S4CDN8_TOBAC; uncharacterized protein LOC107817880 | ||||
STRING | XP_009593754.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03060.2 | 2e-45 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|