PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016499181.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARR-B

Protein Properties

Length: 448aa MW: 51273.6 Da PI: 6.6535

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016499181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	66.1	6.1e-21	209	259	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rl Wtp+LH +F++a++ G ++kA Pk++l+lm+v+ Lt hv+SHLQ XP_016499181.1 209 KQRLIWTPQLHLKFLKAINAVGDEKKAQPKELLKLMNVPNLTHRHVASHLQ 259 79************************************************* PP
2	Response_reg	62.8	1.8e-21	22	130	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vd + + ++ +++le++ y +v++ + ++ al l++e++ +Dl++ ++mp+mdG+++l +i e ++pii+++ +++e+a++al+ G XP_016499181.1 22 ILVVDHDTTSLMHTASILEEQSY-KVTTIELATIALSLIREREnqYDLVIAEVNMPQMDGFTFLNHILLER-DIPIILMSHISNMEMAKKALDEG 114 89*******************.***********766666******************6655.7****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a f Kp+ +++l++ XP_016499181.1 115 ACFFWQKPIRIKDLIN 130 ***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	6.83E-27	18	139	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.0E-30	18	162	No hit	No description
SMART	SM00448	2.4E-17	20	132	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	34.12	21	136	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	4.3E-19	22	130	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	6.53E-19	23	136	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-20	207	268	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-12	208	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-17	209	260	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MDVIKSLENI IAIPSSAKGL RILVVDHDTT SLMHTASILE EQSYKVTTIE LATIALSLIR 60 ERENQYDLVI AEVNMPQMDG FTFLNHILLE RDIPIILMSH ISNMEMAKKA LDEGACFFWQ 120 KPIRIKDLIN VWQHIFHNKV KAKLQKVNKG KFTFQEEESF IEKYRRPEES SCEKSAAEKV 180 EFINHLNDST FNNYKEKKSS QVGINLEQKQ RLIWTPQLHL KFLKAINAVG DEKKAQPKEL 240 LKLMNVPNLT HRHVASHLQD ILKHRLRVMR SSGNFESSRL KPYYGSNELQ KKMDFSKSFF 300 EFSNSSNANQ TASKAQLSIE SSSYFGIDKI KELLKDVKSC SSNMGINEKM DDKETFAIES 360 NSRISSCGIG VINFQEGNYS QGLEKQDLGL NFSGGQFEYD NNLEEYFGNV PNLEVNSGIM 420 GKYEYSCSSP LEKISMCETE IMKILEEV

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MDVIKSLENI IAIPSSAKGL RILVVDHDTT SLMHTASILE EQSYKVTTIE LATIALSLIR  60
ERENQYDLVI AEVNMPQMDG FTFLNHILLE RDIPIILMSH ISNMEMAKKA LDEGACFFWQ  120
KPIRIKDLIN VWQHIFHNKV KAKLQKVNKG KFTFQEEESF IEKYRRPEES SCEKSAAEKV  180
EFINHLNDST FNNYKEKKSS QVGINLEQKQ RLIWTPQLHL KFLKAINAVG DEKKAQPKEL  240
LKLMNVPNLT HRHVASHLQD ILKHRLRVMR SSGNFESSRL KPYYGSNELQ KKMDFSKSFF  300
EFSNSSNANQ TASKAQLSIE SSSYFGIDKI KELLKDVKSC SSNMGINEKM DDKETFAIES  360
NSRISSCGIG VINFQEGNYS QGLEKQDLGL NFSGGQFEYD NNLEEYFGNV PNLEVNSGIM  420
GKYEYSCSSP LEKISMCETE IMKILEEV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774214.1	0.0	PREDICTED: two-component response regulator ARR11
Refseq	XP_016499181.1	0.0	PREDICTED: two-component response regulator ARR11-like
TrEMBL	A0A1S4CDJ5	0.0	A0A1S4CDJ5_TOBAC; two-component response regulator ARR11-like
TrEMBL	A0A1U7WHU3	0.0	A0A1U7WHU3_NICSY; two-component response regulator ARR11
STRING	XP_009774214.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15508	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	2e-47	response regulator 11