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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016499013.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 218aa MW: 25211.9 Da PI: 9.5137 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 8 | 52 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ eEd+l+++++ +lGg+ W++Ia +++ gRt++++k++w++
XP_016499013.1 8 RGNFSREEDDLIIRLHSLLGGR-WSLIAGRLQ-GRTDNEIKNHWNTN 52
89********************.*********.***********986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 24.085 | 1 | 57 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.42E-14 | 3 | 61 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 4.3E-21 | 4 | 58 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 3.1E-15 | 7 | 55 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 3.0E-15 | 8 | 53 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 7.37E-10 | 10 | 53 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 218 aa Download sequence Send to blast |
MHQTGIKRGN FSREEDDLII RLHSLLGGRW SLIAGRLQGR TDNEIKNHWN TNLLKKLKAA 60 GIQPKPKKLT AKGTKPSKKK QEKRRRAGKA KKPEREMEKD ELVKKIQVHI PKPIRLYSLS 120 SSQSSFQDKA EHNIITMLSS EEVDNKNKEE EKIQEPSISS SLSSSVQVEE KETEIYEKIQ 180 LFDELLNGCD FSTECLEPTS CCYMLKEVYK EYFQLLNF |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016499013.1 | 1e-160 | PREDICTED: transcription factor WER-like | ||||
| TrEMBL | A0A1S4CCY6 | 1e-158 | A0A1S4CCY6_TOBAC; transcription factor WER-like | ||||
| STRING | XP_009802421.1 | 1e-151 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA18248 | 3 | 4 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22640.1 | 5e-25 | myb domain protein 3 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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