PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498578.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 340aa    MW: 36996.9 Da    PI: 6.8978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056131153123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  XP_016498578.1 131 YECKTCNRTFSSFQALGGHRASH 153
                     99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-12130155IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-9130153No hitNo description
SMARTSM003550.063131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-9229256No hitNo description
PfamPF139121.8E-9234257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411234261IPR007087Zinc finger, C2H2
SMARTSM003550.093234256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEVSQDFPDR SYAFKGKRSK RSRPSSPLDI AGTMVTSSSS AAGGSDDGGV GGDVYYSSAI  60
IQYSPTTSTT QISTSSTSEE DEDMANCLIL LAQSGCRKVQ VVSEVKKEKI SSRKFTEMVN  120
TTTGKAGFYV YECKTCNRTF SSFQALGGHR ASHKRPKTIV EEKKSVIITA TATAMATASV  180
GADSPVENHD DYHTENDQEE GRFNKISVPL SIQIANNNKV INSHGNSNSK PKIHECSICG  240
SEFLSGQALG GHMRKHKPPT TTTATNSTKV STNTHIETIY NFSESSHDDV GTNYKEEEKS  300
TRNFLSLDLN LPAPPEDDRR ETKFEQSLVF SAAPLVGCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498578.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S4CBQ90.0A0A1S4CBQ9_TOBAC; zinc finger protein ZAT5-like
STRINGXP_009601615.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-47C2H2 family protein