PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016498399.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 238aa MW: 26518.2 Da PI: 10.2158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016498399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	48	93	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+riN +++L++l P++ +K +K+ +L++Av +k+L XP_016498399.1 48 THAMAERKRRERINAHLHTLKKLFPHL-----PKKDKSRVLTEAVTQLKEL 93 8***********************8.....699********999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-13	35	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.109	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.68E-8	47	98	No hit	No description
Pfam	PF00010	4.2E-8	48	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-11	48	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-8	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	5.0E-6	142	210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MLSSLQGCNG FLQRANSGQF LHQRNNNNVV DEYGKSTRKN KSKDVALTHA MAERKRRERI 60 NAHLHTLKKL FPHLPKKDKS RVLTEAVTQL KELRKKVAQQ METQKDSEGN YNGNNGLSSF 120 FLPGENDEVS VNFSEESYND EQTVKATVCC EDRMGLNRDL SAAVRLVQGR VIKAEMATVG 180 GRTKAEMLVV LCKAGGGEKD TGQLRRALMA VVENRCLGLG SSLNLGRRFG DKKWACFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016498399.1	1e-176	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A1S4CBR7	1e-175	A0A1S4CBR7_TOBAC; transcription factor bHLH30-like
STRING	XP_009591424.1	1e-175	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13713	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-22	bHLH family protein