PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497337.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 391aa    MW: 44876.5 Da    PI: 5.5827
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.29e-23281364186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k+ev++L+ +r  +++++ +g +k+  Weev+  ++++g+ r+pk+Ckekwen+nk+yk++ ++ k    ++ ++cpyf++l+
  XP_016497337.1 281 RWPKSEVQDLVSIRIALDHKFLKG-AKGSVWEEVAGGLAKKGYIRTPKKCKEKWENINKYYKRTIDSGKAC-LRNYRSCPYFRELD 364
                     8**********************9.99*****************************************997.456679*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.911274337IPR017877Myb-like domain
CDDcd122031.68E-19280343No hitNo description
PfamPF138372.1E-17280364No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MELLTDGDGH RSNEVTTFPN NSLTPFPVST NAVYSHPASV IPPPPEIDHL PVSPARKLRP  60
VRCGNGRSYV DMVDSSCDMD ETLMNCSSDL GGFFSQFSAQ NANTVIPREC VFEFSAVQQM  120
KSVFDADCFN LISQARILEA EFSSSSDDRE SSEAIEEQLN RKRKRETRDS LKLYLEDMVR  180
RLMDKQEQMH KQLIEMIEKK EQERIIREEA WKQQEIERAK QDEEVRAEES SRNLALISFL  240
ENLLGDEFHI PKSSEMSSRI KDEGEVHGQD ADVRSDPCNR RWPKSEVQDL VSIRIALDHK  300
FLKGAKGSVW EEVAGGLAKK GYIRTPKKCK EKWENINKYY KRTIDSGKAC LRNYRSCPYF  360
RELDILYKSH LLTQGTGDCV KSETESKKVE E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497337.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1S4C7V80.0A0A1S4C7V8_TOBAC; trihelix transcription factor GT-2-like
STRINGXP_009771160.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-43Trihelix family protein