PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 160aa MW: 18953.8 Da PI: 10.0048

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016497178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.3	8.6e-28	2	52	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gkl+eys+ XP_016497178.1 2 KRIENKISRQVTFSKRRLGLLKKTHEISVLCDADVALIVFSAKGKLFEYST 52 79***********************************************96 PP
2	K-box	87.8	2.1e-29	69	152	2	85
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 ++++ ++++++ ++++ e+ kL ++ie Lqr++Rh++GedL+s l+e + LeqqL+++lk+iR++Kn+l++e+i+++q+k + XP_016497178.1 69 AERKLNANDSEPKQNWTMEYPKLMSRIELLQRNIRHYMGEDLDSFCLREFHGLEQQLDTALKRIRARKNQLMHESISQSQRKVN 152 5666777888999********************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00265	9.43E-35	1	69	No hit	No description
SMART	SM00432	1.7E-28	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.53E-29	1	84	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.703	1	54	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-24	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-16	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-16	31	52	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.6E-24	78	152	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.519	81	160	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MKRIENKISR QVTFSKRRLG LLKKTHEISV LCDADVALIV FSAKGKLFEY STESSMESIL 60 ERYESYSYAE RKLNANDSEP KQNWTMEYPK LMSRIELLQR NIRHYMGEDL DSFCLREFHG 120 LEQQLDTALK RIRARKNQLM HESISQSQRK VNYIKISRGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	8e-17	1	66	7	71	Myocyte-specific enhancer factor 2A
3mu6_B	8e-17	1	66	7	71	Myocyte-specific enhancer factor 2A
3mu6_C	8e-17	1	66	7	71	Myocyte-specific enhancer factor 2A
3mu6_D	8e-17	1	66	7	71	Myocyte-specific enhancer factor 2A
6byy_A	9e-17	1	67	8	73	MEF2 CHIMERA
6byy_B	9e-17	1	67	8	73	MEF2 CHIMERA
6byy_C	9e-17	1	67	8	73	MEF2 CHIMERA
6byy_D	9e-17	1	67	8	73	MEF2 CHIMERA
6bz1_A	1e-16	1	67	8	73	MEF2 CHIMERA
6bz1_B	1e-16	1	67	8	73	MEF2 CHIMERA
6bz1_C	1e-16	1	67	8	73	MEF2 CHIMERA
6bz1_D	1e-16	1	67	8	73	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016497178.1	1e-116	PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
Swissprot	D7SMN6	1e-79	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A1S4C7Q4	1e-114	A0A1S4C7Q4_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X1
STRING	XP_009762175.1	1e-106	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA499	23	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	4e-73	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]