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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24630.1 Da PI: 4.4434 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr +k +g+Wv+e+r p++ r r++lg+++tae+Aa+a +aa +l+g XP_016496753.1 21 SKYRGVRKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 71 89*****999.*******999833...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-21 | 21 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-11 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-29 | 22 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-30 | 22 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.339 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 22 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVKPNGKDSC ENSPSSSSSS SKYRGVRKRK WGKWVSEVRL PNSRERIWLG SYDTAEKAAR 60 AFDAALFCLR GKTANFNFPE NPPEILNGRS MTPAEIQVAA AQFANSDSDP RVGNWVNPRE 120 NSDPSSSSSE MFCAESPSVS VSNGLAGLES EKTEMTLDNG FVDMFSSMGT TNDMSNFGIF 180 PGFDDLSGEY YVPPLPNLDN TAEENYMNYD GFHLQGSSFL WNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 17 | 80 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759846.1 | 1e-164 | PREDICTED: ethylene-responsive transcription factor ERF017 | ||||
Refseq | XP_016496753.1 | 1e-164 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 2e-58 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A1S4C6K1 | 1e-163 | A0A1S4C6K1_TOBAC; ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A1U7V4E6 | 1e-163 | A0A1U7V4E6_NICSY; ethylene-responsive transcription factor ERF017 | ||||
STRING | XP_009759846.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-58 | ERF family protein |
Publications ? help Back to Top | |||
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