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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 542aa MW: 57219.6 Da PI: 8.663 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.3e-08 | 205 | 249 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw XP_016496725.1 205 RKPWSETEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249 789************************984222488888888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.537 | 200 | 257 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-12 | 201 | 255 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-13 | 201 | 252 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 204 | 255 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-7 | 205 | 249 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.74E-14 | 206 | 254 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MFEKSKKQKC FVTEEDISTL LQRYNATTVL GVLGEVAAQV AADDKIDWNA LVKKSTTGIT 60 NAREYQMLWR HLAYRHGLLD KLDDAAQPLD DDSDLEYELE AFPTVSNEAS AEAAACVKVL 120 IASGVPNDTN MLNGSTVEAP LTINIPNVQT SRTGVDNSLH GTSIHGTNIT VPVAVQKQPF 180 STVAAAEGLD THGPACTNLP PRRKRKPWSE TEDMELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQRWA IIRKRQGTMV GNGSQLSEAQ LATRRAMSLA LNMPMGDNLK AACPISVSVG 300 QNSGARPSNC SHSVVADFAS VGAQSQHQQD PLSSKPRIVP KKPLPKPNTS PDSMVKVAAV 360 AAGARVATPS NGASLLKTVE SKSAVQLPGG GPAVKSHVPV STNGLPSNVH FIRTGLVSHS 420 TVPSNASRPG TQQVLGHSLK RVSPAFQLSP AGTSSRPNAS AAPNAPICAP VAELDDTKQK 480 LLQKSQTTAL SSAQSEKQVG VVGASGDKAL PPQGQQEKLP ASSNPLIEKV EDQTLSFSDE 540 VK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 206 | PRRKRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016496725.1 | 0.0 | PREDICTED: uncharacterized protein LOC107815624 | ||||
TrEMBL | A0A1S4C683 | 0.0 | A0A1S4C683_TOBAC; uncharacterized protein LOC107815624 | ||||
STRING | XP_009784033.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3434 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-75 | MYB_related family protein |