PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496640.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 400aa    MW: 44916.8 Da    PI: 6.8617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.41.1e-3147151199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_016496640.1  47 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGK 141
                     89***************************966667889*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_016496640.1 142 DRLFIDWRRR 151
                     9999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-4239156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2944152IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-2745134No hitNo description
PfamPF023622.8E-2947151IPR003340B3 DNA binding domain
SMARTSM010191.1E-2247152IPR003340B3 DNA binding domain
PROSITE profilePS5086314.70647152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMDTSPTANH CEGDVEDHHH SHHQNLVDLG VGATANSMAL IEREHMFDKV VTPSDVGKLN  60
RLVIPKQHAE KYFPLDSSAN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK  120
EKKLDAGDIV SFQRGVGELG KDRLFIDWRR RPDAPTDHLH THFMTHVPLS HHFSNNFQYR  180
SNINHQYPAA WNQPVFLQPD HSPLHSRPAG SMSHQQQYSY SAYGIGNSPN YYDTASNFNN  240
MPSSRIVVNG NPCPSGSVVY LRSGSVAQVP QQEFGLMKQM QRGSNSSSIV GDESGRLAEP  300
MVFDSVPVVQ GKAAPKRLRL FGVNMDCTVS DSDESCDMSS SSSSLPTATY SHTHQFSTST  360
PSLQFRTFYN YDDAKPLQTA PTDEELTGKG KESMSLDLEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-67401521114B3 domain-containing transcription factor NGA1
5os9_B6e-67401521114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6686470.0KF668647.1 Nicotiana benthamiana NGATHAa mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496640.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A1S4C6150.0A0A1S4C615_TOBAC; B3 domain-containing transcription factor NGA1-like
STRINGXP_009758550.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-72B3 family protein