PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016496556.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32755.4 Da PI: 4.5255

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016496556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	84	136	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t++ql+ Le+ Fe ++++ e++ +LAk+lgL+ rq+ +WFqNrRa+++ XP_016496556.1 84 KRRLTADQLQFLEKSFEVENKLEPERKDQLAKELGLQPRQIAIWFQNRRARWR 136 6689************************************************9 PP
2	HD-ZIP_I/II	125.8	1.9e-40	82	173	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krrl+++q+++LE+sFe e+kLeperK +la+eLglqprq+a+WFqnrRAR++tkqlE+dyeaL+++yd+lk++ +L ke+++Lr+++ XP_016496556.1 82 EQKRRLTADQLQFLEKSFEVENKLEPERKDQLAKELGLQPRQIAIWFQNRRARWRTKQLENDYEALRNKYDNLKADYINLLKEKDDLRAQVI 173 58**************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.734	78	138	IPR001356	Homeobox domain
SMART	SM00389	2.4E-18	80	142	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.61E-19	82	149	IPR009057	Homeodomain-like
Pfam	PF00046	6.2E-17	83	136	IPR001356	Homeobox domain
CDD	cd00086	6.54E-18	84	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-21	85	145	IPR009057	Homeodomain-like
PRINTS	PR00031	6.5E-6	109	118	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.5E-6	118	134	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-11	138	179	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAGPELFYGD AAGFNGILLQ NQGLMSSFAT KEAVGSPASF LASGSMVSFR GVNGGNKSAR 60 SFFQSVEENE TDELEEYLHQ PEQKRRLTAD QLQFLEKSFE VENKLEPERK DQLAKELGLQ 120 PRQIAIWFQN RRARWRTKQL ENDYEALRNK YDNLKADYIN LLKEKDDLRA QVIQFTDKLL 180 LKEKEKGELA TSDIKELSDA SPKENMIDQK VSAITLKQHE DLNSVKSDAF DSESLVQSSI 240 LDQSDLSQDE EENLSKNLVV HDHYPMTSSN LSCFGYPGED QGFGFWSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800807.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
Refseq	XP_016496556.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A1S4C5R8	0.0	A0A1S4C5R8_TOBAC; homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A1U7Y9K8	0.0	A0A1U7Y9K8_NICSY; homeobox-leucine zipper protein HAT5-like
STRING	XP_009800807.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-40	homeobox 1