PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496517.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 464aa    MW: 51121.1 Da    PI: 9.6326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496517.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_016496517.1  6 FICEICNKGFQRDQNLQLHRRGH 28
                    89*******************88 PP
2zf-C2H213.20.0002783105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_016496517.1  83 WKCEKCSKKYAVQSDWKAHTKIC 105
                     58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-7528No hitNo description
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PfamPF121715.5E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355904878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-778103No hitNo description
SMARTSM0035513083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNKN EVIKKKVYIC PEKTCIHHDP  60
SRALGDLTGI KKHYSRKHGE KKWKCEKCSK KYAVQSDWKA HTKICGTREY KCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FTSVPSTTNL NFRNELLSGG MISGNPQFGN SLFRPEFMGL  180
GLDPAINQLN VDGQKPRIPL WLDNNINPNS GNNPNDFLVA SSSSNSNLPH QLVQMAPPHN  240
NQQWFINGGG DDSGFGSTSS LPSRVLKEEE ENKRNLSETI SSMYYNSHHQ ETTTTTPSHM  300
SATALLQKAA QMGSTRSNSA LFGNGFGLMG SSFSKNNGQF AADQNLNGLM MNSPPSAVST  360
LTTTNNNNNN NQAGNRLLLG GDLMNSSLLE GNSSAKNSNP FLMLNNKGKQ VNLSGNEAIE  420
GSLTRDFLGV GGNENRPFLS KNELAKFGNT STSAMGLSQY NGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3779144368Zinc finger protein JACKDAW
5b3h_F4e-3779144368Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-147HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620251.10.0PREDICTED: protein indeterminate-domain 9-like
RefseqXP_016496517.10.0PREDICTED: zinc finger protein JACKDAW-like
TrEMBLA0A1S4C5N70.0A0A1S4C5N7_TOBAC; zinc finger protein JACKDAW-like
STRINGXP_009620251.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.12e-89C2H2-like zinc finger protein