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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 190aa MW: 22122.2 Da PI: 9.6421 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.1 | 1.4e-26 | 16 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 lp+G+rF+Ptdeel yL ++i+e+diyk++P++L ++k++e ++yfF++ +ky++gk+ +r ++g+Wka+ + XP_016496356.1 16 LPQGVRFKPTDEELN-SYL------------RIINELDIYKYDPKELSgFAIKHSEGRMYFFTPLTNKYENGKKIQRkiYSDEGFWKASQARSDH 97 799**********98.676............4699************966888888899***************999433669************ PP NAM 93 lskkgelvglkktLvfy..kg.rapkgektdWvmheyrl 128 +k+g+ +g+k+ Lv+y kg +++kg+kt+W+m+e+rl XP_016496356.1 98 REKNGAIIGTKTNLVYYeyKGqKKSKGTKTSWLMQEFRL 136 **9**************664448999***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.87 | 6 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-31 | 14 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-16 | 17 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAMATTDNGY EWKKKLPQGV RFKPTDEELN SYLRIINELD IYKYDPKELS GFAIKHSEGR 60 MYFFTPLTNK YENGKKIQRK IYSDEGFWKA SQARSDHREK NGAIIGTKTN LVYYEYKGQK 120 KSKGTKTSWL MQEFRLPENH HPRPLFNGTM NELIICVIYD NGRVKDDDQV VILTQCNPQN 180 AIGIKVSVNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-19 | 16 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-19 | 16 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-19 | 16 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-19 | 16 | 159 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 4e-19 | 16 | 159 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 4e-19 | 16 | 159 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 4e-19 | 16 | 159 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016496356.1 | 1e-142 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A1S4C580 | 1e-141 | A0A1S4C580_TOBAC; NAC domain-containing protein 72-like | ||||
STRING | XP_009793522.1 | 1e-122 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15567 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 2e-18 | TCV-interacting protein |