PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 827aa MW: 94936.8 Da PI: 7.4861 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.6 | 9.1e-28 | 67 | 153 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk+++dgkw+++++ ++HnHel p XP_016496267.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGATPESDAG---TSRRPSVKKTNCKASMHVKRKRDGKWYIHEFIKDHNHELLP 153 9***************************************999888...7788899*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-25 | 67 | 153 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.4E-26 | 273 | 365 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.027 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.3E-6 | 560 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.1E-8 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MVDHGVVVQS SLQVIGDMVD AVDNTCHNRD GGVATSPKRS IAGVEGNADL EPRDGIEFES 60 HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGATPESD AGTSRRPSVK 120 KTNCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ LDRGRCLSLE EGDAQVMLEY FMHIQRENPY 240 FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY TKSNEKMPFV LFVGVNHHCQ 300 PMLLGCALVA DETKPTFVWL MKTWLRAVGG QAPKVMITDQ DKSLKAAIEE VFPCSRHCFA 360 LWHVLERIPD ILAHVIKQHE NFMEKFSKCI FNSVTDEQFD LRWWKMVSRF ELQENEWIHT 420 LYEERRKWVP AYMRGSFFAG MSTAQRSESI SSFFDKYIHK KISLKEFMRQ YGMILQNRYE 480 EEAVADFEIL QKHPALKSPS PWEKQMSTIY THAIFRKFQV EVLGVVGCHP KKEAENGETV 540 TFRVNDCEKN ENFMVMWNEA KSDVSCSCLL FEYKGFLCRH AMNVLQICGL PSIPSQYILK 600 RWTKDAKNRQ LLLEETERIT RVQRYNDLCR RAIELGEEGS LSEESYGIAF RVLDEALKDC 660 VNVNNKSSTL TECSSSSIGL RDLEQDTQGI HATKTSRKKN TNKKRKVHTE PEAAIVEAQD 720 SLQQMGNLSV GGMTLNGYYG TQQNVQGLIQ LNLMEPPHDG YYVNQQNMQG LGQLNTIAPG 780 HDGFFGSQQS IPGLGHLDFR QPSFTYGLQD EPSLRASQLH GNSARHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016496264.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_016496265.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_016496266.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_016496267.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_016496268.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1S4C507 | 0.0 | A0A1S4C507_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
STRING | XP_009618573.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |