PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496055.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 352aa    MW: 40211.5 Da    PI: 8.1477
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++
  XP_016496055.1  25 FLTKTYQLVDDPTTDHIVSWGEDDSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_016496055.1 111 IHRRKTA 117
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAMMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDST FIVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPQ  120
ISMNHHHHSL NHQMNMSSPN FFPNYPNNNR LSISPPDSDE LLLQQQQPNI NWCDSPTTIT  180
SSNNNNTTVT ALSEDNERLR RSNNMLMSEL AHMRKLYNDI IYFVQNHVKP VAPSSSYNPS  240
SLLPASATPI VQKHMINPRQ GMINNGMNIM MSNFNNVNSP SKTSQSSSVT ILEEAAADMG  300
INRSTKLFGV PLMSKKRVHP EYSSFKMVET NKARLVLEKD DLGLNLMPPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222111717123Heat shock factor protein 1
5d5u_B2e-222111626131Heat shock factor protein 1
5d5v_B2e-222111626131Heat shock factor protein 1
5d5v_D2e-222111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-77HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496055.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-117HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1S4C4J30.0A0A1S4C4J3_TOBAC; heat stress transcription factor B-4-like
STRINGXP_009800135.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-98heat shock transcription factor B4