PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016495917.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 427aa MW: 46590.4 Da PI: 9.4111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016495917.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L++H + H XP_016495917.1 194 TCHKCGEQFGKWEALESHHLSkH 216 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	195	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.88E-21	218	426	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-7	231	406	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKGGGGGGG GSRSGCSRSI 60 ANLKDVIHGS KRHLEKPPSC SPRSIGSSEF LNPITHEVIL SNSRCELKIT SFNGFQESSP 120 SSTFVGTLRP GTPGPGGNPT MHYFNSGCRN SVATPTRRSA SFLVDKEGSA NSFPCKTTRH 180 SLDNDVNGTS SGVTCHKCGE QFGKWEALES HHLSKHAVSE LLEGDSSRKI VEIICRSSWL 240 KSESHVGRIE RVLKVHNTQK TLARFEEYRE MVKIKASKLP KKHPRCIADG NELLRFYGTT 300 LACGLGMNGT CSLCVSDKCC VCRIIRNGFT TKKELKGGIG VFTTSTSARA YECIELSEDD 360 PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV GVYSNIEELY LLNPRALLPC 420 FVVICKA

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKGGGGGGG GSRSGCSRSI  60
ANLKDVIHGS KRHLEKPPSC SPRSIGSSEF LNPITHEVIL SNSRCELKIT SFNGFQESSP  120
SSTFVGTLRP GTPGPGGNPT MHYFNSGCRN SVATPTRRSA SFLVDKEGSA NSFPCKTTRH  180
SLDNDVNGTS SGVTCHKCGE QFGKWEALES HHLSKHAVSE LLEGDSSRKI VEIICRSSWL  240
KSESHVGRIE RVLKVHNTQK TLARFEEYRE MVKIKASKLP KKHPRCIADG NELLRFYGTT  300
LACGLGMNGT CSLCVSDKCC VCRIIRNGFT TKKELKGGIG VFTTSTSARA YECIELSEDD  360
PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV GVYSNIEELY LLNPRALLPC  420
FVVICKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU560900	0.0	EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016495917.1	0.0	PREDICTED: uncharacterized protein LOC107814927
TrEMBL	A0A1S4C434	0.0	A0A1S4C434_TOBAC; uncharacterized protein LOC107814927
STRING	XP_009776647.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-175	C2H2 family protein