PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495886.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 657aa    MW: 71649.6 Da    PI: 6.617
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.87.9e-26209265155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ...kYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ   k+Rl
  XP_016495886.1 209 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQenqKFRL 265
                     79*******************.****************************73337776 PP
2Response_reg76.97.1e-26251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+q+l+k +y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  +++ + ++ G
  XP_016495886.1  25 VLVVDDDIVCLRILEQMLRKCKY-SVTTCTQATVALNLLRERRgsFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRGVQHG 117
                     89*********************.***************999999*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel +
  XP_016495886.1 118 ACDYLIKPIRDEELKN 133
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.3E-4122166No hitNo description
SuperFamilySSF521722.13E-3522147IPR011006CheY-like superfamily
SMARTSM004487.4E-3023135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.80624139IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2325133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.74E-2726138No hitNo description
PROSITE profilePS5129411.669206265IPR017930Myb domain
SuperFamilySSF466891.31E-16206269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-27207270IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-22209259IPR006447Myb domain, plants
PfamPF002493.0E-6211259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MASMSGDGAT CKSEATDTFP VGLRVLVVDD DIVCLRILEQ MLRKCKYSVT TCTQATVALN  60
LLRERRGSFD VVLSDVHMPD MDGFKLLELV GLEMDLPVIM MSGDGRTNLV MRGVQHGACD  120
YLIKPIRDEE LKNIWQHVVR KKCSFSKEPE YSGSLDDNDR HKRGNDDAEC ASSVIEGADR  180
VLKPQKKKRD AKEEDEMEME NDDPTTAKKP RVVWSVELHQ QFVSAVNQLG IDKAVPKRIL  240
ELMNVPGLTR ENVASHLQEN QKFRLYLKRL SGVAQQQGGF PSTYCGPIEQ NPKLGSLGRF  300
DIQALAASGQ IPPETLTALH AELLGRSSGN LVLPSVEQPD LLQASLQQAK CIPVDHVVAY  360
GQPLMKCPPS ITNPKLLSQP TMSAEDVHSG FGSWRAKNIC MVPSSNLTGL AAPDSNMLMA  420
MMQHQQQWQK QQQLEQQQKQ SGLSEANHSI NVKPSCLVLP SQSPGNFQVG DSPGSISQAC  480
SLSKSSIIDY RVLSPQSNNS SAVVQVLDRE LKPACGLNRL STAASFTPLV SACSVHADNS  540
VGLQLHNSSS AFGASKQLPG FVPNHLGFPV SCYSKPSQIL DQGPTRNPGV GKAASIPSRF  600
AVDESDSPMC NFSTAKVYTE DTKVKQEPNM NIMENAKVGP ALFQNFPSGD LMSVFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21205271164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4125410.0JF412541.1 Nicotiana tabacum RRB1 type-b response regulator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776286.10.0PREDICTED: uncharacterized protein LOC104226094 isoform X1
RefseqXP_016495886.10.0PREDICTED: two-component response regulator ORR21-like isoform X1
SwissprotA2XE311e-146ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-146ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A1S4C3Z00.0A0A1S4C3Z0_TOBAC; two-component response regulator ORR21-like isoform X1
TrEMBLA0A1U7WG970.0A0A1U7WG97_NICSY; uncharacterized protein LOC104226094 isoform X1
STRINGXP_009776286.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-109response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]