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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_016495765.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
C3H |
| Protein Properties |
Length: 297aa MW: 33650.2 Da PI: 6.9227 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016495765.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 23.7 | 8.6e-08 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k++lC+ffar G C G+ C F H+
XP_016495765.1 3 KRVLCKFFAR-GACLKGEHCDFLHD 26
99********.*************6 PP
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| 2 | zf-CCCH | 23 | 1.4e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C ++++ G+C +G+rC++ H+
XP_016495765.1 34 VCTYYQK-GICAFGSRCRYEHV 54
5******.***********997 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 15.328 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.3E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.09E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.7E-6 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-4 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.31 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0022 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.1E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 3.28E-12 | 115 | 186 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 1.5E-9 | 115 | 181 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 6.64E-4 | 121 | 181 | No hit | No description |
| SMART | SM00184 | 9.1E-7 | 122 | 179 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 2.1E-7 | 122 | 179 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE profile | PS50089 | 12.238 | 122 | 180 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 146 | 155 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 12.821 | 209 | 238 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.033 | 209 | 237 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MSKRVLCKFF ARGACLKGEH CDFLHDSEDV PNNVCTYYQK GICAFGSRCR YEHVKITRSQ 60
PSLPSSSANI VELKRVNATD QSICSSSTAG NCPQGKKEEH MKTCETRENQ HDLLKHSQEI 120
ECGVCLERVL SKTIMAERKF GILSECDHPF CISCIRNWRN SSPSIGMDVN STLRACPICR 180
KLSYFVIPSV IWYSTKEEKQ EIINSYKAKL RSIDCKKFDF GNGTCPFGAS CFYKHTVKPG 240
LKLWNSTLMP DLHGSSFSDA DETESGSDGD MESFRALFEE AMAFMMWLRD YDTSDDE
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