 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016495764.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
C3H |
| Protein Properties |
Length: 302aa MW: 34308 Da PI: 6.9699 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016495764.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.2 | 5.3e-07 | 8 | 31 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++lC+ffar G C G+ C F H+
XP_016495764.1 8 SRVLCKFFAR-GACLKGEHCDFLHD 31
589*******.*************6 PP
|
| 2 | zf-CCCH | 23 | 1.4e-07 | 39 | 59 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C ++++ G+C +G+rC++ H+
XP_016495764.1 39 VCTYYQK-GICAFGSRCRYEHV 59
5******.***********997 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.756 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.5E-4 | 7 | 32 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-7 | 9 | 31 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF15663 | 1.6E-7 | 12 | 69 | No hit | No description |
| PROSITE profile | PS50103 | 13.31 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-5 | 36 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0022 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 3.53E-12 | 120 | 191 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 1.6E-9 | 120 | 186 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 6.89E-4 | 126 | 186 | No hit | No description |
| PROSITE profile | PS50089 | 12.238 | 127 | 185 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 9.1E-7 | 127 | 184 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 2.2E-7 | 127 | 184 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 151 | 160 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 12.821 | 214 | 243 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.033 | 214 | 242 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MHFLKIFSRV LCKFFARGAC LKGEHCDFLH DSEDVPNNVC TYYQKGICAF GSRCRYEHVK 60
ITRSQPSLPS SSANIVELKR VNATDQSICS SSTAGNCPQG KKEEHMKTCE TRENQHDLLK 120
HSQEIECGVC LERVLSKTIM AERKFGILSE CDHPFCISCI RNWRNSSPSI GMDVNSTLRA 180
CPICRKLSYF VIPSVIWYST KEEKQEIINS YKAKLRSIDC KKFDFGNGTC PFGASCFYKH 240
TVKPGLKLWN STLMPDLHGS SFSDADETES GSDGDMESFR ALFEEAMAFM MWLRDYDTSD 300
DE
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
