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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016495620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 660aa MW: 73044.9 Da PI: 6.6358 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 2e-23 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +a+++ ++ + tl +d +g++W++++iyr++++r++lt+GW Fv++++L +gD++vF+ + + XP_016495620.1 131 FAKILTQSDANNGGGFSVPRYCADTIfprldysADPPVQ--TLLAKDVHGKTWKFRHIYRGTPRRHLLTTGWTTFVNSKKLVAGDSIVFM--RAE 221 89*********************999****996555545..8999*********************************************..347 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++ +v+++r XP_016495620.1 222 NGDVCVGIRR 231 8888***998 PP | |||||||
2 | Auxin_resp | 105.2 | 7.6e-35 | 276 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+++Prast+eF vk+++v++al+++++ GmRfkma+eteds ++Gt+ +v+ +dp+rWp+S+Wr+L+ XP_016495620.1 276 AANLAASGQPFEVTFYPRASTPEFFVKASSVKAALQIRWCSGMRFKMAVETEDSTMSWFMGTICSVQVADPIRWPDSPWRLLQ 358 7899****************************************************999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.94E-29 | 122 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-36 | 124 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.89E-19 | 130 | 231 | No hit | No description |
PROSITE profile | PS50863 | 13.169 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-21 | 131 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-20 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-30 | 276 | 358 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 11.158 | 574 | 654 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MKRVYCISTE SVNLKMITSK EEEEKWLDSK FWHACAGSIV QMPAVNSIVF YFPQGHAEHA 60 CGNVEFRSEI RIPSYIPCRV SGIKYMADQE NDEVFAKIRL TPVSSNEVEI VDDGVVAKSG 120 LDNDQENPTS FAKILTQSDA NNGGGFSVPR YCADTIFPRL DYSADPPVQT LLAKDVHGKT 180 WKFRHIYRGT PRRHLLTTGW TTFVNSKKLV AGDSIVFMRA ENGDVCVGIR RVKKGIAGGH 240 ETSFAVPYRG FSTFLRDDEN KLMKRGKVKA ESVIEAANLA ASGQPFEVTF YPRASTPEFF 300 VKASSVKAAL QIRWCSGMRF KMAVETEDST MSWFMGTICS VQVADPIRWP DSPWRLLQVT 360 WDEPDLLQHV KCVNPWLVEL VSNMPTVHFS PVSPQQKKPR LLQRSDFPLN CHLPMPGFPD 420 NHFLPNDTPA GMQGARHTQY GFSLSDLHFN KLHSSPFPVG FPPLDHAAAT PSPSNSTLIP 480 KPSSSNDMSC LLTLGSSTET ATKSDCDKAP QLVLFGQPIF TEQQISLSSS GDTVSPVCAR 540 ASSSDGNADK IGNISDESAF TFDHHGLSEQ NVEIGHCKVF IESEDVGLTL ELSELGSYEA 600 LHKKLSNIFG IKIPEMLNRV LYRDITGAVK QLGDEPFSDF VKTARRLTIL TDASSVGARE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-80 | 27 | 379 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016495620.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Refseq | XP_016495621.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1S4C3B7 | 0.0 | A0A1S4C3B7_TOBAC; Auxin response factor | ||||
STRING | XP_009605930.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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