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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016495590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1687aa MW: 185411 Da PI: 6.7208 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.6e-09 | 814 | 855 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++d + +G++ +++Ia+ + ++t +c+++++k XP_016495590.1 814 PWTSEEREIFIDKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 855 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 30.2 | 1.1e-09 | 1032 | 1072 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ + ++r++ +R+++qck ++ XP_016495590.1 1032 DWTDEEKSIFIQAVSAYGKD-FVMVSRCVR-TRSREQCKIFFS 1072 5*****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.79E-14 | 797 | 858 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 805 | 856 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.417 | 810 | 861 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-9 | 811 | 859 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-6 | 813 | 855 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.71 | 1028 | 1079 | IPR017884 | SANT domain |
SMART | SM00717 | 8.2E-9 | 1029 | 1077 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.45E-10 | 1030 | 1079 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-7 | 1032 | 1071 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-5 | 1032 | 1073 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.19E-7 | 1033 | 1071 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1687 aa Download sequence Send to blast |
MPSEPLPWDR KDFFKERRQH DRSELLRGGP RWREPPPRHH YGSSRWVPAD FRPTRGAPPG 60 HGKQGSWHMY PEESGHGFMP SRSNEKIVED ESCRQSRGDG GGKYGSRSSS RENRSFGGQR 120 DWRRGGGLSW EAAASPSGPV RQHDTATNDQ RPADVMVPHN SEHVNNTWEQ SHSRDQHNKS 180 GSANGTASTG QRFERGNSLG SIEWRPLKWA RSGSLSSRGS LSHSGSSKSM GVDSNETKPE 240 LQPGNSKALQ SPTGDATACV TSAAPSEETF SRKKPRLGWG EGLAKYEKKK VPEDSAAKVG 300 ACISGDSVEP GHPHPLNTAD KSPRVAVSLD CPSPATPSSV ACSSSPGLED KQPVKATNID 360 QDVGNLCGSP SIISQYHSEE FAFNLENFDL SQISNLNSSI NELLQSEDSS SVDSGFMRST 420 AVNKLLIWKN DISKVLEKTE VEIDSLENEL KTMISEPEYT QLVPSGSCSP RKECNSNSHE 480 DRGTTDIASR PAPLQVVIPE DVIGQEGTNI QEKEHTEVKV EDIDSPGSAT SKFVELPSEK 540 DTAPVDAMKH VGGMLISDDS KSLSNNVKVC SSTEDKAKSR SSDVKVCSFS EDMARDTLAC 600 GESSQLTARC SRPVSDGSLN CGKDALYNLI LAANKDTAYR AFDVFKNLLP AGKCSFDFSS 660 VSSLQIDHAV KERFARRKQF KQFKEKIIAL KFRVHQHLWK EDMRMLSARK FRAKSQKKFD 720 FSLRPVQIGH QKHRSTVRSR FLTTVGKSNL VPSSEVLNFA SRLLSDLRTK VYRNTLRMPA 780 LVLDQERTMS RFISKNSLVE DPCAVEKERS VINPWTSEER EIFIDKLATF GKDFRKIASF 840 LDHKTTADCI EFYYKNHKSD CFERTKRKSD YSKQAKVCSA NTYLVASSGK RWNRESNSVS 900 LDILGAASAI AANVEDSIEI QQKCTSKYSV RMVTEHKTSR HNELERSNSL DVCHSERERV 960 AADVLTGICG SLSSEAMSSC ITSSIDPAEG NQEWKHQKVG SLTRLPLTPE VTQSVDDETC 1020 SDESCGEMDP TDWTDEEKSI FIQAVSAYGK DFVMVSRCVR TRSREQCKIF FSKARKCLGL 1080 DKILPGPGNL VRQDVNGGND PDACVMETEL FCNEKSSLKL KELSDLCVSA GISKPDMTSF 1140 DDKDGAGELD SVDTELVSKN SVQVNCHVDK QRVEFNRHCE IHIGACTENG RGDENMVTVS 1200 QEGGVQIDGD VSENGPADIL CANKVSGEHL GEEIKEVVPE RDFKNRKADS AEVSRSNFFL 1260 EDTASRSNSR LAAVRGGELC PLNGSQNTTL LESDSECKPD VNYSESNISV QRKKMPRASN 1320 AVYLSELELE NVGDQQRENA TQSAEQPLPS TSQIAHVDSR QILGSYSLGE SATKESGDGC 1380 STSAALQEIQ KVGKNLRSDT SSTTGFFFQR CNGTNREQTV GGSSSNVDKP CRNGDVKLFG 1440 QILSKPCPQA NTSSNAQQSD SSNQQLKVCS NMSSATHSLD GNSATAKFER NNFLGSENHQ 1500 VRSFGFWDGN RIQTGFSSLP DSAILLAKYP AAFGNYAIAS SKVEQQPPLH GVVKTATERS 1560 LNGVPVFPXV FPTRDVSSNN GVAAADYQVY RSLDVQPFTI EMKQRQDAVF SEMQRRNGFD 1620 VVSSMQQQAR GVVVGRGGIL VGGQCTGVSD PVAAIKMHYA KAEQFSGQAT SIIREDDYWL 1680 SKGDISR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 4e-15 | 773 | 863 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 4e-15 | 773 | 863 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016495590.1 | 0.0 | PREDICTED: uncharacterized protein LOC107814661 | ||||
TrEMBL | A0A1S4C388 | 0.0 | A0A1S4C388_TOBAC; uncharacterized protein LOC107814661 | ||||
STRING | XP_009589065.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5904 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-150 | MYB family protein |