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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016495537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 530aa MW: 58826.1 Da PI: 6.5098 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.6 | 3.1e-115 | 157 | 529 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilk 92 lv+lL++cAeav+ +d+++a+ lL++l+ a g+++qR+a++f+++La rla ++ y a+pp +++++ +++ aal+l++e++P ++ XP_016495537.1 157 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFVQGLADRLALvqpLGTVGYVAIPPMNKTDMALEKKEAALRLLYEICPHIQ 251 689*************************************************987312233457788999999999999**************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 f+h++aN Ilea+ege+ +H++D+++s +G QW L+q+La+ +++pp +lRiT+vg+ + e+ + +g+ L+ +A++lg+++ef++ v XP_016495537.1 252 FGHFVANCSILEAFEGESFIHVVDLGMSvglpHGHQWRRLIQSLANGTGQPPhRLRITAVGQ----NIEKFQIIGDELEAYARSLGINLEFSA-V 341 *************************9884444678***********99776659********....99*************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++le+l++++++v gE+l+Vn++lqlh +++es + +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl++ lp+ XP_016495537.1 342 ESNLENLTPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPK 433 9*******************************88877777...8*************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 + r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++ +++qak l+kv+ +g+++ ee+g+lvlgWk++p+v++S XP_016495537.1 434 YDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLAKVNaYQGFTITEEKGCLVLGWKSKPIVAAS 526 ***************************************************96..79***********9************************** PP GRAS 372 aWr 374 +W+ XP_016495537.1 527 CWK 529 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.893 | 131 | 510 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-112 | 157 | 529 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MTYDMVTSFL SLEPCNDDKI VYDSLENGLY LSHKELAYSL NPYTAVFKRN AASMFSNLSN 60 ESGDFKRLRR TPSLGESLGS NSISFYSDSS SSSSGGGSSI PRNDSTNSVN SLQLAPGLHF 120 RDHVWALNQR YLAAEAIEEA AADIISQEEE NGEGVKLVQL LITCAEAVAC RDKSRASVLL 180 SELRASALVF GTSFQRVASC FVQGLADRLA LVQPLGTVGY VAIPPMNKTD MALEKKEAAL 240 RLLYEICPHI QFGHFVANCS ILEAFEGESF IHVVDLGMSV GLPHGHQWRR LIQSLANGTG 300 QPPHRLRITA VGQNIEKFQI IGDELEAYAR SLGINLEFSA VESNLENLTP KDIKVYDGEV 360 LVVNSILQLH CVVKESRGAL NSVLQVVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY 420 SAIFDSLDVM LPKYDTRRAK IEQFYFAEEI KNIVSCEGPA RVERHERVDQ WRRRMSRAGF 480 QAAPIKMVSQ AKQWLAKVNA YQGFTITEEK GCLVLGWKSK PIVAASCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-61 | 145 | 528 | 6 | 377 | Protein SCARECROW |
5b3h_D | 5e-61 | 145 | 528 | 6 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769411.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_016495537.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4C2Z8 | 0.0 | A0A1S4C2Z8_TOBAC; DELLA protein RGL1-like | ||||
TrEMBL | A0A1U7VWS8 | 0.0 | A0A1U7VWS8_NICSY; DELLA protein RGL1-like | ||||
STRING | XP_009769411.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 4e-76 | GRAS family protein |