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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016495501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 858aa MW: 97709.5 Da PI: 8.725 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.6e-13 | 18 | 106 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ + ++++k+ +p +f+ ++g + + ++le +sg W+vkl +++ g+ +l++GW +F + + g f++F+++g+s f v+ XP_016495501.1 18 FFKIILFPHASKL---HIPDEFVMKYGANMRD--LVSLEVPSGALWKVKL--QNSNGMAWLKEGWDQFKEYYSIGCGYFLLFQYNGNSHF--SVS 103 5666666666665...5*********988655..8***************..**********************************9999..999 PP EE- CS B3 96 vfr 98 +f+ XP_016495501.1 104 IFD 106 987 PP | |||||||
2 | B3 | 56.6 | 4.5e-18 | 741 | 836 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ + p +v+++ +l +p +f++++ ++ e+ ++l+ ++gr+W+ +++++ + r+ + GW+eF+ +ngLk+ D++vF+l++ e l+++ XP_016495501.1 741 FIVSMQPTHVSRNFLLNIPGNFFRRYFKE--EEAFVILRASDGRTWRARCSFQSNCARI-HSPGWREFALDNGLKVHDTCVFELMEGIELVLNIT 832 67789999******************755..4457****************99998885.577*********************98877778888 PP EE-S CS B3 96 vfrk 99 +fr+ XP_016495501.1 833 IFRA 836 8886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.617 | 15 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-19 | 15 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-20 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.41E-15 | 16 | 106 | No hit | No description |
SMART | SM01019 | 1.4E-12 | 18 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-10 | 18 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-23 | 735 | 839 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-22 | 735 | 839 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.42E-21 | 739 | 835 | No hit | No description |
SMART | SM01019 | 1.1E-14 | 741 | 837 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.592 | 741 | 837 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-17 | 741 | 836 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MVKRRRQAVN VAEITPQFFK IILFPHASKL HIPDEFVMKY GANMRDLVSL EVPSGALWKV 60 KLQNSNGMAW LKEGWDQFKE YYSIGCGYFL LFQYNGNSHF SVSIFDLSAS EIEYPSGPSE 120 DMTPENFVKI VGDASHIKKE VGPETNNNAC DDIVDDLLRK KTAKVTKVAD HSYPRRQRSG 180 VPEWQDPIRV NLEKPDVEED LYCATDKEKR KEIKKEKLEK QNMEKNLYHA ADKGKAEHCK 240 EVLDPPASKM TNTSRCNKRK YSTSLEAPHC RHPLRSKSKP VEVVKLDQSK TEGTMHCVKP 300 KNTVVADSSH SGRQKTAAPI SCPETIEPKT KPEKVNLEED FHCAAPKARR GETNMEKLEK 360 QVVQQNVYAE AYKFKEHCNE VPVVDSSASK MTTTNQQSEK KTTINLDASC CRYPLRSKQL 420 KEVKLEKRDT EEDLFCAAQK AKKTETNRVK LDKGDAEEHC IEVPVVDPSA PKMTTTNQHT 480 EKKTAMSSDV LHCRYPLRSK QLKDVMIEKR DLKEHCNEVS VVDLSASKMI TTNRHTEKKT 540 ATSLDASWCR YPLRSKQLKD VKIEKRDVEE HCNKLPVMDP SASEMTTTNQ HSGKKTATSL 600 DVSRCRYPLR SKQLKEVKLE QWGGEKNMHN LKPKNKVVAD SPYCERQNSG LPASSPSFHP 660 EKKEPIRVKL EKPDVEEDLF CAAQKAKMKV INNVKLEIGD VEGNLNSAAY KVKASEMTNT 720 WQEKGYTLID AQCSKLGNPY FIVSMQPTHV SRNFLLNIPG NFFRRYFKEE EAFVILRASD 780 GRTWRARCSF QSNCARIHSP GWREFALDNG LKVHDTCVFE LMEGIELVLN ITIFRADSCF 840 LKDNLPLCGQ GRDSVTVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-14 | 714 | 837 | 22 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-14 | 714 | 837 | 22 | 143 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797235.1 | 0.0 | PREDICTED: uncharacterized protein LOC104243691 isoform X1 | ||||
Refseq | XP_016495501.1 | 0.0 | PREDICTED: uncharacterized protein LOC107814576 isoform X1 | ||||
TrEMBL | A0A1S4C2V3 | 0.0 | A0A1S4C2V3_TOBAC; uncharacterized protein LOC107814576 isoform X1 | ||||
TrEMBL | A0A1U7YEL2 | 0.0 | A0A1U7YEL2_NICSY; uncharacterized protein LOC104243691 isoform X1 | ||||
STRING | XP_009797235.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13290 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-22 | B3 family protein |